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gtatctgagctatgatacgtatctgtatgtctgtatcgattgaagttttcttgaatgaagttttcaatcttacacccttgtttttctatttacagTACAGACAATCAAAGTGTTGATCGTGCTTACCGAATTGGACAGACTAAAAATGTGATTGTATACCGCTTGATGACATCTGCGACCATTGAAGAAAAGATA
species | Zea mays |
transcript | GRMZM2G138125_T03 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: CTCACCAAGGCAACTCGTGTCATTGTAGTTGATCCTGCATGGAACCCTAG TACAGACAATCAAAGTGTTGATCGTGCTTACCGAATTGGACAGACTAAAAAEST: gi|67035224|gb|CO463757.1|CO463757
genomic: CTCACCAAGGCAACTCGTGTCATTGTAGTTGATCCTGCATGGAACCCTAGgtatctgagc ... ctatttacagTACAGACAATCAAAGTGTTGATCGTGCTTACCGAATTGGACAGACTAAAAA
EST: TCACCAAGGCAACTCGTGTCATTGTTAGT-GATCCTGCATGGGACCCTAG TACAGACNATCAAAGTGTTGATCGTGCTTACCGAAT-GGACAGACTAAAA-EST: gi|28987103|gb|CB351465.1|CB351465
genomic: TCACCAAGGCAACTCGTGTCATTGT-AGTTGATCCTGCATGGAACCCTAGgtatctgagc ... ctatttacagTACAGACAATCAAAGTGTTGATCGTGCTTACCGAATTGGACAGACTAAAAA
EST: CTCACCAAGGCAACTCGTGTCATTGCAGTTGATCCTGCATGGAACCCTAG TACAGACAATCAAAGGGTTGATCGGGCTTACCGAATTGGACAGACTAAAAAEST: gi|94475969|gb|EB704927.1|EB704927
genomic: CTCACCAAGGCAACTCGTGTCATTGTAGTTGATCCTGCATGGAACCCTAGgtatctgagc ... ctatttacagTACAGACAATCAAAGTGTTGATCGTGCTTACCGAATTGGACAGACTAAAAA
EST: CTCACCAAGGCAACTCGTGTCATTGTAGTTGATCCTGCATGGAACCCTAG TACAGACAATCAAAGTGTTGATCGTGCTTACCGAATTGGACAGACTAAAAAEST: gi|31909131|gb|CD650765.1|CD650765
genomic: CTCACCAAGGCAACTCGTGTCATTGTAGTTGATCCTGCATGGAACCCTAGgtatctgagc ... ctatttacagTACAGACAATCAAAGTGTTGATCGTGCTTACCGAATTGGACAGACTAAAAA
EST: CTCACCAAGGCAACTCGTGTCATTGTAGTTGATCCTGCATGGAACCCTAG TACAGACAATCAAAGTGTTGATCGTGCTTACCGAATTGGACAGACTAAAAAEST: gi|28930971|gb|CB334332.1|CB334332
genomic: CTCACCAAGGCAACTCGTGTCATTGTAGTTGATCCTGCATGGAACCCTAGgtatctgagc ... ctatttacagTACAGACAATCAAAGTGTTGATCGTGCTTACCGAATTGGACAGACTAAAAA
EST: CTCACCAAGGCAACTCGTGTCATTGTAGTTGATCCTGCATGGAACCCTAG TACAGACAATCAAAGGGTTGATCGTGCTTACCGAATTGGACAGACTAAAAA
genomic: CTCACCAAGGCAACTCGTGTCATTGTAGTTGATCCTGCATGGAACCCTAGgtatctgagc ... ctatttacagTACAGACAATCAAAGTGTTGATCGTGCTTACCGAATTGGACAGACTAAAAA
tgaagttttcttgaatgaagttttcaatcttacacccttgtttttctatttacagTACAGACAATCAAAGTGTTGATCGTGCTTACCGAATTGGACAGACTAAAAATGTGATTGTATACCGCTTGATGACATCTGCGACCATTGAAGAAAAGATA
atcttac putative branch site (score: 93)
cccttgtttttctatt CT-rich tract
ttgtttttctattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatctgagctatgatacgtatctgtatgtctgtatcgattgaagttttcttgaatgaagttttcaatcttacacccttgtttttctatttacagTACAGACAATCAAAGTGTTGATCGTGCTTACCGAATTGGACAGACTAAAAATGTGATTGTATACCGCTTGATGACATCTGCGACCATTGAAGAAAAGATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA