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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagctatttgaaccttccatgcagtagttctacctttcatctggattttgaaagtttatgttaaatcatttgaacagGCATCTGAGATCCTGAAGAACCCGTACCTACAACCTTATGTTAATCAATACCGGCCCCTTTATGATTCTTCAAACCCAATGCGGATGCCAGAGAAACAAT

Basic information

species Zea mays
transcript GRMZM2G137118_T01
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G137118_T02 (Zea mays), 3'ss of exon 13
lower sequence: LOC_Os05g36960.1 (Oryza sativa), 3'ss of exon 12
gtaagctatttgaaccttccatgcagtagttctacct-ttcatctggattttgaaagtttatgttaaatcatttgaacagGCATCTGAGATCCTGAAGAACCCGTACCTACAACCTTATGTTAATCAATACCGGCCCCTTTATGATTCTTCAAACCCAATGCGGATGCCAGAGAAACAAT
||||| ||     ||  | | || | ||| | ||  | |||||||||||| |||||    |||  ||||| | | |||||||||||||||| |||||||| ||||| || ||||||||||||||||||| ||| || |||| |||| || |||  || || || ||||||||||||| ||
gtaagttacc---acagttcttgaaatagctttatttcttcatctggattctgaaaacacatgaaaaatcttgttaacagGCATCTGAGATTCTGAAGAATCCGTATCTCCAACCTTATGTTAATCAATGCCGCCCTCTTTCTGATGCTCCAACTCCCATACGCATGCCAGAGAAACCAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31355277|gb|CD439634.1|CD439634
EST:     AAACCCTAATCAAAAGTATGTTGAGGAAGAGTCCTGAGCATCGACCTACT                         GCATCTGAGATCCTGAAGAACCCGTACCTACAACCTTATGTTAATCAATAC
genomic: AAACCCTAATCAAAAGTATGTTGAGGAAGAGTCCAGAGCATCGACCTACTgtaagctatt ... atttgaacagGCATCTGAGATCCTGAAGAACCCGTACCTACAACCTTATGTTAATCAATAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtagttctacctttcatctggattttgaaagtttatgttaaatcatttgaacagGCATCTGAGATCCTGAAGAACCCGTACCTACAACCTTATGTTAATCAATACCGGCCCCTTTATGATTCTTCAAACCCAATGCGGATGCCAGAGAAACAAT
                      attttgaaagtttatg  TA-rich tract