1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtcactcaaagtcttggttttttctccctaagaaaacaaaccacagtgactgttttagatgcatttgcattcgttgaggtgtccttatcactagttggatgatctgatttatgttttgtttttaattcttgcaatttagGTGGAACAAAGCTGAAGGACTTTGTTGCCACTTTGCAATCTGATAGCATCCAAGTTGAGATTGCAAAGCTTCGCCATGATGTAGAGGAATTTGCAAAACA
species | Zea mays |
transcript | GRMZM2G135283_T02 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: CTTCGATGCAGCAGTGAATCTGGCCTTGAAGATTAAGGCTGCAACGACAG GTGGAACAAAGCTGAAGGACTTTGTTGCCACTTTGCAATCTGATAGCATCCEST: gi|108953686|gb|EC364842.1|EC364842
genomic: CTTCGATGCAGCAGTGAATCTGGCCTTGAAGATTAAGGCTGCAACGACAGgtcactcaaa ... tgcaatttagGTGGAACAAAGCTGAAGGACTTTGTTGCCACTTTGCAATCTGATAGCATCC
EST: CTTCGATGCAGCAGTGAATCTGGCCTTGAAGATTAAGGCTGCAACGACAG GTGGAACAAAGCTGAAGGACTTTGTTGCCACTTTGCAATCTGATAGCATCCEST: gi|6449712|gb|AW181252.1|AW181252
genomic: CTTCGATGCAGCAGTGAATCTGGCCTTGAAGATTAAGGCTGCAACGACAGgtcactcaaa ... tgcaatttagGTGGAACAAAGCTGAAGGACTTTGTTGCCACTTTGCAATCTGATAGCATCC
EST: CTTCGATGCAGCAGTGAATCTGGCCTTGAAGATTAAGGCTGCAACGACAG GTGGAACAAAGCTGAAGGACTTTGTTGCCACTTTGCAATCTGATAGCATCCEST: gi|67017024|gb|CO445773.1|CO445773
genomic: CTTCGATGCAGCAGTGAATCTGGCCTTGAAGATTAAGGCTGCAACGACAGgtcactcaaa ... tgcaatttagGTGGAACAAAGCTGAAGGACTTTGTTGCCACTTTGCAATCTGATAGCATCC
EST: CTTCGATGCAGCAGTGAATCTGGCCTTGAAGATTAAGGCTGCAACGACAG GTGGAACAAAGCTGAAGGACTTTGTTGCCACTTTGCAATCTGATAGCATCCEST: gi|37391313|gb|CF632898.1|CF632898
genomic: CTTCGATGCAGCAGTGAATCTGGCCTTGAAGATTAAGGCTGCAACGACAGgtcactcaaa ... tgcaatttagGTGGAACAAAGCTGAAGGACTTTGTTGCCACTTTGCAATCTGATAGCATCC
EST: CTTCGATGCAGCAGTGAATCTGGCCTTGAAGATTAAGGCTGCAACGACAG GTGGAACAAAGCTGAAGGACTTTGTTGCCACTTTGCAATCTGATAGCATCCEST: gi|113703934|gb|EE681438.1|EE681438
genomic: CTTCGATGCAGCAGTGAATCTGGCCTTGAAGATTAAGGCTGCAACGACAGgtcactcaaa ... tgcaatttagGTGGAACAAAGCTGAAGGACTTTGTTGCCACTTTGCAATCTGATAGCATCC
EST: CTTCGATGCAGCAGTGAATCTGGCCTTGAAGATTAAGGCTGCAACGACAG GTGGAACAAAGCTGAAGGACTTTGTTGCCACTTTGCAATCTGATAGCATCCEST: gi|148945830|gb|EC891119.2|EC891119
genomic: CTTCGATGCAGCAGTGAATCTGGCCTTGAAGATTAAGGCTGCAACGACAGgtcactcaaa ... tgcaatttagGTGGAACAAAGCTGAAGGACTTTGTTGCCACTTTGCAATCTGATAGCATCC
EST: TTTCGATGCAGCAGTGAATCTGGCCTTGAAGATTAAGGCTGCAACGACAG GTGGAACAAAGCTGAAGGACTTTGTTGCCACTTTGCAATCTGATAGCATCCEST: gi|60353152|gb|DN220125.1|DN220125
genomic: CTTCGATGCAGCAGTGAATCTGGCCTTGAAGATTAAGGCTGCAACGACAGgtcactcaaa ... tgcaatttagGTGGAACAAAGCTGAAGGACTTTGTTGCCACTTTGCAATCTGATAGCATCC
EST: CTTCGATGCAGCAGTGAATCTGGCCTTGAAGATTAAGGCTGCAACGACAG GTGGAACAAAGCTGAAGGACTTTGTTGCCACTTTGCAATCTGATAGCATCCEST: gi|5804699|gb|AI979669.1|AI979669
genomic: CTTCGATGCAGCAGTGAATCTGGCCTTGAAGATTAAGGCTGCAACGACAGgtcactcaaa ... tgcaatttagGTGGAACAAAGCTGAAGGACTTTGTTGCCACTTTGCAATCTGATAGCATCC
EST: CTTCGATGCAGCAGTGAATCTGGCCTTGAAGATTAAGGCTGCAACGACAG GTGGAACAAAGCTGAAGGACTTTGTTGCCACTTTGCAATCTGATAGCATCCEST: gi|6194529|gb|AW146633.1|AW146633
genomic: CTTCGATGCAGCAGTGAATCTGGCCTTGAAGATTAAGGCTGCAACGACAGgtcactcaaa ... tgcaatttagGTGGAACAAAGCTGAAGGACTTTGTTGCCACTTTGCAATCTGATAGCATCC
EST: CTTCGATGCAGCAGTGAATCTGGCCTTGAAGATTAAGGCTGCAACGACAG GTGGAACAAAGCTGAAGGACTTTGTTGCCACTTTGCAATCTGATAGCATCCEST: gi|148928192|gb|EE284698.2|EE284698
genomic: CTTCGATGCAGCAGTGAATCTGGCCTTGAAGATTAAGGCTGCAACGACAGgtcactcaaa ... tgcaatttagGTGGAACAAAGCTGAAGGACTTTGTTGCCACTTTGCAATCTGATAGCATCC
EST: TTTCGATGCAGCAGTGAATCTGGCCTTGAAGATTAAGGCTGCAACGACAG GTGGAACAAAGCTGAAGGACTTTGTTGCCACTTTGCAATTTGATAGCATCCEST: gi|148973318|gb|EE024403.2|EE024403
genomic: CTTCGATGCAGCAGTGAATCTGGCCTTGAAGATTAAGGCTGCAACGACAGgtcactcaaa ... tgcaatttagGTGGAACAAAGCTGAAGGACTTTGTTGCCACTTTGCAATCTGATAGCATCC
EST: TTTCGATGCAGCAGTGAATTTGGCCTTGAAGATTAAGGCTGCAACGACAG GTGGAACAAAGCTGAAGGACTTTGTTGCCACTTTGCAATTTGATAGCATCCEST: gi|5713711|gb|AI943703.1|AI943703
genomic: CTTCGATGCAGCAGTGAATCTGGCCTTGAAGATTAAGGCTGCAACGACAGgtcactcaaa ... tgcaatttagGTGGAACAAAGCTGAAGGACTTTGTTGCCACTTTGCAATCTGATAGCATCC
EST: TTTCGATGCAGCAGTGAATCTGGCCTTGAAGATTAAGGCTGCAACGACAG GTGGAACAAAGCTGAAGGACTTTGTTGCCACTTTGCAATCTGATAGCATCCEST: gi|60397906|gb|DN230722.1|DN230722
genomic: CTTCGATGCAGCAGTGAATCTGGCCTTGAAGATTAAGGCTGCAACGACAGgtcactcaaa ... tgcaatttagGTGGAACAAAGCTGAAGGACTTTGTTGCCACTTTGCAATCTGATAGCATCC
EST: CTTCGATGCAGCAGTGAATCTGGCCTTGAAGATTAAGGCTGCAACGACAG GTGGAACAAAGCTGAAGGACTTTGTTGCCACTTTGCAATCTGATAGCATCCEST: gi|40336482|gb|CK370552.1|CK370552
genomic: CTTCGATGCAGCAGTGAATCTGGCCTTGAAGATTAAGGCTGCAACGACAGgtcactcaaa ... tgcaatttagGTGGAACAAAGCTGAAGGACTTTGTTGCCACTTTGCAATCTGATAGCATCC
EST: CTTCGATGCAGCAGTGAATCTGGCCTTGAAGATTAAGGCTGCAACGACAG GTGGAACAAAGCTGAAGGACTTTGTTGCCACTTTGCAATCTGATAGCATCCEST: gi|148958251|gb|EC904465.2|EC904465
genomic: CTTCGATGCAGCAGTGAATCTGGCCTTGAAGATTAAGGCTGCAACGACAGgtcactcaaa ... tgcaatttagGTGGAACAAAGCTGAAGGACTTTGTTGCCACTTTGCAATCTGATAGCATCC
EST: TTTCGATGCAGCAGTGAATTTGGCCTTGAAGATTAAGGCTGCAACGACAG GTGGAACAAAGCTGAAGGACTTTGTTGCCACTTTGCAATTTGATAGCATCCEST: gi|5915216|gb|AW052857.1|AW052857
genomic: CTTCGATGCAGCAGTGAATCTGGCCTTGAAGATTAAGGCTGCAACGACAGgtcactcaaa ... tgcaatttagGTGGAACAAAGCTGAAGGACTTTGTTGCCACTTTGCAATCTGATAGCATCC
EST: CTTCGATGCAGCAGTGAATCTGGCCTTGAAGATTAAGGCTGCAACGACAG GTGGAACAAAGCTGAAGGACTTTGTTGCCCCTTTGCAATCTGATAGCATCCEST: gi|6102053|gb|AW126523.1|AW126523
genomic: CTTCGATGCAGCAGTGAATCTGGCCTTGAAGATTAAGGCTGCAACGACAGgtcactcaaa ... tgcaatttagGTGGAACAAAGCTGAAGGACTTTGTTGCCACTTTGCAATCTGATAGCATCC
EST: TTTCGATGCAGCAGTGAATCTGGCCTTGAAGATTAAGGCTGCAACGACAG GTGGAACAAAGCTGAAGGACTTTGTTGCCACTTTGCAATCTGATAGCATCCEST: gi|149089956|gb|EE179245.2|EE179245
genomic: CTTCGATGCAGCAGTGAATCTGGCCTTGAAGATTAAGGCTGCAACGACAGgtcactcaaa ... tgcaatttagGTGGAACAAAGCTGAAGGACTTTGTTGCCACTTTGCAATCTGATAGCATCC
EST: TTTCGATGCAGCAGTGAATCTGGCCTTGAAGATTAAGGCTGCAACGACAG GTGGAACAAAGCTGAAGGACTTTGTTGCCACTTTGCAATCTGATAGCATCCEST: gi|60344488|gb|DN211461.1|DN211461
genomic: CTTCGATGCAGCAGTGAATCTGGCCTTGAAGATTAAGGCTGCAACGACAGgtcactcaaa ... tgcaatttagGTGGAACAAAGCTGAAGGACTTTGTTGCCACTTTGCAATCTGATAGCATCC
EST: CTTCGATGCAGCAGTGAATCTGGCCTTGAAGATTAAGGCTGCAACGACAG GTGGAACAAAGCTGAAGGACTTTGTTGCCACTTTGCAATCTGATAGCATCCEST: gi|32867520|gb|CF007202.1|CF007202
genomic: CTTCGATGCAGCAGTGAATCTGGCCTTGAAGATTAAGGCTGCAACGACAGgtcactcaaa ... tgcaatttagGTGGAACAAAGCTGAAGGACTTTGTTGCCACTTTGCAATCTGATAGCATCC
EST: GAATCTGGCCTTGAAGATTAAGGCTGCAACGACAG GTGGAACAAAGCTGAAGGACTTTGTTGCCACTTTGCAATCTGATAGCATCCEST: gi|60343439|gb|DN210412.1|DN210412
genomic: GAATCTGGCCTTGAAGATTAAGGCTGCAACGACAGgtcactcaaa ... tgcaatttagGTGGAACAAAGCTGAAGGACTTTGTTGCCACTTTGCAATCTGATAGCATCC
EST: CTTCGATGCAGCAGTGAATCTGGCCTTGAAGATTAAGGCTGCAACGACAG GTGGAACAAAGCTGAAGGACTTTGTTGCCACTTTGCAATCTGATAGCATCCEST: gi|37393418|gb|CF633973.1|CF633973
genomic: CTTCGATGCAGCAGTGAATCTGGCCTTGAAGATTAAGGCTGCAACGACAGgtcactcaaa ... tgcaatttagGTGGAACAAAGCTGAAGGACTTTGTTGCCACTTTGCAATCTGATAGCATCC
EST: CTTCGATGCAGCAGTGAATCTGGCCTTGAAGATTAAGGCTGCAACGACAG GTGGAACAAAGCTGAAGGACTTTGTTGCCACTTTGCAATCTGATAGCATCCEST: gi|60357206|gb|DN224179.1|DN224179
genomic: CTTCGATGCAGCAGTGAATCTGGCCTTGAAGATTAAGGCTGCAACGACAGgtcactcaaa ... tgcaatttagGTGGAACAAAGCTGAAGGACTTTGTTGCCACTTTGCAATCTGATAGCATCC
EST: CTTCGATGCAGCAGTGAATCTGGCCTTGAAGATTAAGGCTGCAACGACAG GTGGAACAAAGCTGAAGGACTTTGTTGCCACTTTGCAATCTGATAGCATCCEST: gi|89249961|gb|DY621747.1|DY621747
genomic: CTTCGATGCAGCAGTGAATCTGGCCTTGAAGATTAAGGCTGCAACGACAGgtcactcaaa ... tgcaatttagGTGGAACAAAGCTGAAGGACTTTGTTGCCACTTTGCAATCTGATAGCATCC
EST: TTTCGATGCAGCAGTGAATCTGGCCTTGAAGATTAAGGCTGCAACGACAG GTGGAACAAAGCTGAAGGACTTTGTTGCCACTTTGCAATCTGATAGCATCCEST: gi|211373639|gb|FL261168.1|FL261168
genomic: CTTCGATGCAGCAGTGAATCTGGCCTTGAAGATTAAGGCTGCAACGACAGgtcactcaaa ... tgcaatttagGTGGAACAAAGCTGAAGGACTTTGTTGCCACTTTGCAATCTGATAGCATCC
EST: CTTCGATGCAGCAGTGAATCTGGCCTTGAAGATTAAGGCTGCAACGACAG GTGGAACAAAGCTGAAGGACTTTGTTGCCACTTTGCAATCTGATAGCATCCEST: gi|60352787|gb|DN219760.1|DN219760
genomic: CTTCGATGCAGCAGTGAATCTGGCCTTGAAGATTAAGGCTGCAACGACAGgtcactcaaa ... tgcaatttagGTGGAACAAAGCTGAAGGACTTTGTTGCCACTTTGCAATCTGATAGCATCC
EST: CTTCGATGCAGCAGTGAATCTGGCCTTGAAGATTAAGGCTGCAACGACAG GTGGAACAAAGCTGAAGGACTTTGTTGCCACTTTGCAATCTGATAGCATCCEST: gi|113700941|gb|EE678445.1|EE678445
genomic: CTTCGATGCAGCAGTGAATCTGGCCTTGAAGATTAAGGCTGCAACGACAGgtcactcaaa ... tgcaatttagGTGGAACAAAGCTGAAGGACTTTGTTGCCACTTTGCAATCTGATAGCATCC
EST: CTTCGATGCAGCAGTGAATCTGGCCTTGAAGATTAAGGCTGCAACGACAG GTGGAACAAAGCTGAAGGACTTTGTTGCCACTTTGCAATCTGATAGCATCCEST: gi|67013913|gb|CO442662.1|CO442662
genomic: CTTCGATGCAGCAGTGAATCTGGCCTTGAAGATTAAGGCTGCAACGACAGgtcactcaaa ... tgcaatttagGTGGAACAAAGCTGAAGGACTTTGTTGCCACTTTGCAATCTGATAGCATCC
EST: CTTCGATGCAGCAGTGAATCTGGCCTTGAAGATTAAGGCTGCAACGACAG GTGGAACAAAGCTGAAGGACTTTGTTGCCACTTTGCAATCTGATAGCATCCEST: gi|14204327|gb|BG838004.1|BG838004
genomic: CTTCGATGCAGCAGTGAATCTGGCCTTGAAGATTAAGGCTGCAACGACAGgtcactcaaa ... tgcaatttagGTGGAACAAAGCTGAAGGACTTTGTTGCCACTTTGCAATCTGATAGCATCC
EST: CTTCGATGCAGCAGTGAATCTGGCCTTGAAGATTAAGGCTGCAACGACAG GTGGAACAAAGCTGAAGGACTTTGTTGCCACTTTGCAATCTGATAGCATCCEST: gi|32850232|gb|CD989913.1|CD989913
genomic: CTTCGATGCAGCAGTGAATCTGGCCTTGAAGATTAAGGCTGCAACGACAGgtcactcaaa ... tgcaatttagGTGGAACAAAGCTGAAGGACTTTGTTGCCACTTTGCAATCTGATAGCATCC
EST: CTTCGATGCAGCAGTGAATCTGGCCTTGAAGATTAAGGCTGCAACGACAG GTGGAACAAAGCTGAAGGACTTTGTTGCCACTTTGCAATCTGATAGCATCCEST: gi|60354435|gb|DN221408.1|DN221408
genomic: CTTCGATGCAGCAGTGAATCTGGCCTTGAAGATTAAGGCTGCAACGACAGgtcactcaaa ... tgcaatttagGTGGAACAAAGCTGAAGGACTTTGTTGCCACTTTGCAATCTGATAGCATCC
EST: CTTCGATGCAGCAGTGAATCTGGCCTTGAAGATTAAGGCTGCAACGACAG GTGGAACAAAGCTGAAGGACTTTGTTGCCACTTTGCAATCTGATAGCATCCEST: gi|211502770|gb|FL432440.1|FL432440
genomic: CTTCGATGCAGCAGTGAATCTGGCCTTGAAGATTAAGGCTGCAACGACAGgtcactcaaa ... tgcaatttagGTGGAACAAAGCTGAAGGACTTTGTTGCCACTTTGCAATCTGATAGCATCC
EST: CTTCGATGCAGCAGTGAATCTGGCCTTGAAGATTAAGGCTGCAACGACAG GTGGAACAAAGCTGAAGGACTTTGTTGCCACTTTGCAATCTGATAGCATCC
genomic: CTTCGATGCAGCAGTGAATCTGGCCTTGAAGATTAAGGCTGCAACGACAGgtcactcaaa ... tgcaatttagGTGGAACAAAGCTGAAGGACTTTGTTGCCACTTTGCAATCTGATAGCATCC
ttatcactagttggatgatctgatttatgttttgtttttaattcttgcaatttagGTGGAACAAAGCTGAAGGACTTTGTTGCCACTTTGCAATCTGATAGCATCCAAGTTGAGATTGCAAAGCTTCGCCATGATGTAGAGGAATTTGCAAAACA
ttttaat putative branch site (score: 3)
ttcttgc CT-rich tract
atttatgttttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcactcaaagtcttggttttttctccctaagaaaacaaaccacagtgactgttttagatgcatttgcattcgttgaggtgtccttatcactagttggatgatctgatttatgttttgtttttaattcttgcaatttagGTGGAACAAAGCTGAAGGACTTTGTTGCCACTTTGCAATCTGATAGCATCCAAGTTGAGATTGCAAAGCTTCGCCATGATGTAGAGGAATTTGCAAAACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA