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...ttttgctagataatatggacagatagtataaataatgcttattggttacagaaattccatgcatgtttcagctaatgataaattactgggacatgaatagGTTCCTTGTCGAACAGCTATGAGGGGTAGTTTCCCACTTAATGGCACTTACTTTCAAGTCAATGAG
species | Zea mays |
transcript | GRMZM2G131756_T02 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: GTACTGCAGAGAAAGAAAACCAATCTAGATATGTCAGAGGCACAATTCTG GTTCCTTGTCGAACAGCTATGAGGGGTAGTTTCCCACTTAACGGCACTTACEST: gi|211151599|gb|FL276380.1|FL276380
genomic: GTACTGCAGAGAAAGAAAACCAATCTAGATATGTCAGAGGCACAATTCTGgtaatggaat ... acatgaatagGTTCCTTGTCGAACAGCTATGAGGGGTAGTTTCCCACTTAATGGCACTTAC
EST: AAACCAATCTAGATATGTCAGAGGCACAATTCTG GTTCCTTGTCGAACAGCTATGAGGGGTAGTTTCCCACTTAATGGCACTTACEST: gi|60339031|gb|DN206004.1|DN206004
genomic: AAACCAATCTAGATATGTCAGAGGCACAATTCTGgtaatggaat ... acatgaatagGTTCCTTGTCGAACAGCTATGAGGGGTAGTTTCCCACTTAATGGCACTTAC
EST: GTACTGCAGAGAAAGAAAACCAATCTAGATATGTCAGAGGCACAATTCTG GTTCCTTGTCGAACAGCTATGAGGGGTAGTTTCCCACTTAACGGCACTTACEST: gi|60347567|gb|DN214540.1|DN214540
genomic: GTACTGCAGAGAAAGAAAACCAATCTAGATATGTCAGAGGCACAATTCTGgtaatggaat ... acatgaatagGTTCCTTGTCGAACAGCTATGAGGGGTAGTTTCCCACTTAATGGCACTTAC
EST: GTACTGCAGAGAAAGAAAACCAATCTAGATATGTCAGAGGCACAATTCTG GTTCCTTGTCGAACAGCTATGAGGGGTAGTTTCCCACTTAATGGCACTTACEST: gi|5901234|gb|AW042334.1|AW042334
genomic: GTACTGCAGAGAAAGAAAACCAATCTAGATATGTCAGAGGCACAATTCTGgtaatggaat ... acatgaatagGTTCCTTGTCGAACAGCTATGAGGGGTAGTTTCCCACTTAATGGCACTTAC
EST: GTACTGCAGAGAAAGAAAACCAATCTAGATATGTCAGAGGCACAATTCTG GTTCCTTGTCGAACAGCTATGAGGGGTAGTTTCCCACTTAATGGCACTTAC
genomic: GTACTGCAGAGAAAGAAAACCAATCTAGATATGTCAGAGGCACAATTCTGgtaatggaat ... acatgaatagGTTCCTTGTCGAACAGCTATGAGGGGTAGTTTCCCACTTAATGGCACTTAC
ttacagaaattccatgcatgtttcagctaatgataaattactgggacatgaatagGTTCCTTGTCGAACAGCTATGAGGGGTAGTTTCCCACTTAATGGCACTTACTTTCAAGTCAATGAG
agctaat putative branch site (score: 3)
taatgataaattact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttgctagataatatggacagatagtataaataatgcttattggttacagaaattccatgcatgtttcagctaatgataaattactgggacatgaatagGTTCCTTGTCGAACAGCTATGAGGGGTAGTTTCCCACTTAATGGCACTTACTTTCAAGTCAATGAG
ttttgct
- - - - - - - - - - - - - - - - - atgctta
- - - - - - - - - - - - - - - - - - - - - - - -acagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tactggg