1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...cagattacttggatgaagtgctctatataaaattaaatatttcataatccagtccctttcgagaaaattatgatacattttgtttgcaattgtacaccagTTATGTGTTGCTGTTCCCTGCCACATACTCAAGTTCTGGGCTTTCTTAGGAATCATGCTTCAG
species | Zea mays |
transcript | GRMZM2G130749_T01 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: GAAGTTGCTGTTTTTATATCGTTCTTTGTTTCTGCTGTACTTCATGAG TTATGTGTTGCTGTTCCCTGCCACATACTCAAGTTCTGGGCTTTCTTAGGAEST: gi|211193694|gb|FL010949.1|FL010949
genomic: GAAGTTGCTGTTTTTATATCGTTCTTTGTTTCTGCTGTACTTCATGAGgtaacttatt ... tgtacaccagTTATGTGTTGCTGTTCCCTGCCACATACTCAAGTTCTGGGCTTTCTTAGGA
EST: TTTATATCGTTCTTTGTTTCTGCTGTACTTCATGAG TTATGTGTTGCTGTTCCCTGCCACATACTCAAGTTCTGGGCTTTCTTAGGA
genomic: TTTATATCGTTCTTTGTTTCTGCTGTACTTCATGAGgtaacttatt ... tgtacaccagTTATGTGTTGCTGTTCCCTGCCACATACTCAAGTTCTGGGCTTTCTTAGGA
aatccagtccctttcgagaaaattatgatacattttgtttgcaattgtacaccagTTATGTGTTGCTGTTCCCTGCCACATACTCAAGTTCTGGGCTTTCTTAGGAATCATGCTTCAG
aaaattatgatacatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cagattacttggatgaagtgctctatataaaattaaatatttcataatccagtccctttcgagaaaattatgatacattttgtttgcaattgtacaccagTTATGTGTTGCTGTTCCCTGCCACATACTCAAGTTCTGGGCTTTCTTAGGAATCATGCTTCAG
- - - - ttggatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gagaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tacattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtttgc