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gtaaatatgataaaaagctgtagaactcacttaacctgtggtatccactttctgaaaaatgcatacgttcgtacctggtgcttctgcagATAGCACCTTATGACCAATTGGAAATGCTGGAGCGGTTGGTGGAGGCTCCGAGTCCAGCAGCAGCGTCTGCAGTGGCCTCGTCATGATACAGCAGAAAGA
species | Zea mays |
transcript | GRMZM2G129208_T01 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: CGATGGGAAACTATGCAGTTTCTATAACTTGGCCTGATGGCTTTAGTCAG ATAGCACCTTATGACCAATTGGAAATGCTGGAGCGGTTGGTGGAGGCTCCGEST: gi|32941145|gb|CF045964.1|CF045964
genomic: CGATGGGAAACTATGCAGTTTCTATAACTTGGCCTGATGGATTTAGTCAGgtaaatatga ... gcttctgcagATAGCACCTTATGACCAATTGGAAATGCTGGAGCGGTTGGTGGAGGCTCCG
EST: CGATGGGAAACTATGCAGTTTCTATAACTTGGCCTGATGGATTTAGTCAG ATAGCACCTTATGACCAATTGGAAATGCTGGAGCGGTTGGTGGAGGCTCCGEST: gi|32942098|gb|CF046917.1|CF046917
genomic: CGATGGGAAACTATGCAGTTTCTATAACTTGGCCTGATGGATTTAGTCAGgtaaatatga ... gcttctgcagATAGCACCTTATGACCAATTGGAAATGCTGGAGCGGTTGGTGGAGGCTCCG
EST: CGATGGGAAACTATGCAGTTTCTATAACTTGGCCTGATGGATTTAGTCAG ATAGCACCTTATGACCAATTGGAAATGCTGGAGCGGTTGGTGGAGGCTCCGEST: gi|32942009|gb|CF046828.1|CF046828
genomic: CGATGGGAAACTATGCAGTTTCTATAACTTGGCCTGATGGATTTAGTCAGgtaaatatga ... gcttctgcagATAGCACCTTATGACCAATTGGAAATGCTGGAGCGGTTGGTGGAGGCTCCG
EST: CGATGGGAAACTATGCAGTTTCTATAACTTGGCCTGATGGATTTAGTCAG ATAGCACCTTATGACCAATTGGAAATGCTGGAGCGGTTGGTGGAGGCTCCG
genomic: CGATGGGAAACTATGCAGTTTCTATAACTTGGCCTGATGGATTTAGTCAGgtaaatatga ... gcttctgcagATAGCACCTTATGACCAATTGGAAATGCTGGAGCGGTTGGTGGAGGCTCCG
cctgtggtatccactttctgaaaaatgcatacgttcgtacctggtgcttctgcagATAGCACCTTATGACCAATTGGAAATGCTGGAGCGGTTGGTGGAGGCTCCGAGTCCAGCAGCAGCGTCTGCAGTGGCCTCGTCATGATACAGCAGAAAGA
tgcttct CT-rich tract
tgaaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaatatgataaaaagctgtagaactcacttaacctgtggtatccactttctgaaaaatgcatacgttcgtacctggtgcttctgcagATAGCACCTTATGACCAATTGGAAATGCTGGAGCGGTTGGTGGAGGCTCCGAGTCCAGCAGCAGCGTCTGCAGTGGCCTCGTCATGATACAGCAGAAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG