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...atactagaccaaaaatcaagattttgggtgttacaattttctactcatatttctccattttattttttaaataattctgacaagtgttgtttaatattagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAG
species | Zea mays |
transcript | GRMZM2G128877_T03 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: ACAGCAAAGCTACTGAGAGAAGATTATTTGGCACAAAATGCATTTACCCC ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATATEST: gi|60338201|gb|DN205174.1|DN205174
genomic: ACAGCAAAGCTACTGAGAGAAGATTATTTGGCACAAAATGCATTTACCCCgtgagtcccc ... ttaatattagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATAT
EST: ACAGCAAAGCTACTGAGAGAAGATTATTTGGCACAAAATGCATTTACCCC ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATATEST: gi|5770168|gb|AI973342.1|AI973342
genomic: ACAGCAAAGCTACTGAGAGAAGATTATTTGGCACAAAATGCATTTACCCCgtgagtcccc ... ttaatattagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATAT
EST: CACAAAATGCATTTACCCC ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATATEST: gi|13149764|gb|BG320086.1|BG320086
genomic: CACAAAATGCATTTACCCCgtgagtcccc ... ttaatattagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATAT
EST: ACAGCAAAGCTACTGAGAGAAGATTATTTGGCACAAAATGCATTTACCCC ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATATEST: gi|32831320|gb|CD970998.1|CD970998
genomic: ACAGCAAAGCTACTGAGAGAAGATTATTTGGCACAAAATGCATTTACCCCgtgagtcccc ... ttaatattagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATAT
EST: ACAGCAAAGCTACTGAGAGAAGATTATTTGGCACAAAATGCATTTACCCC ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATATEST: gi|4646572|gb|AI491316.2|AI491316
genomic: ACAGCAAAGCTACTGAGAGAAGATTATTTGGCACAAAATGCATTTACCCCgtgagtcccc ... ttaatattagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATAT
EST: AAAATGCATTTACCCC ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATATEST: gi|32928400|gb|CF033212.1|CF033212
genomic: AAAATGCATTTACCCCgtgagtcccc ... ttaatattagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATAT
EST: ACAGCAAAGCTACTGAGAGAAGATTATTTGGCACAAAATGCATTTACCCC ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATATEST: gi|32837774|gb|CD977452.1|CD977452
genomic: ACAGCAAAGCTACTGAGAGAAGATTATTTGGCACAAAATGCATTTACCCCgtgagtcccc ... ttaatattagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATAT
EST: ACAGCAAAGCTACTGAGAGAAGATTATTTGGCACAAAATGCATTTACCCC ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATATEST: gi|5296280|gb|AI783050.1|AI783050
genomic: ACAGCAAAGCTACTGAGAGAAGATTATTTGGCACAAAATGCATTTACCCCgtgagtcccc ... ttaatattagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATAT
EST: ACAGCAAAGCTACTGAGAGAAGATTATTTGGCACAAAATGCATTTACCCC ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATATEST: gi|5846764|gb|AI999847.1|AI999847
genomic: ACAGCAAAGCTACTGAGAGAAGATTATTTGGCACAAAATGCATTTACCCCgtgagtcccc ... ttaatattagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATAT
EST: ACAGCAAAGCTACTGAGAGAAGATTATTTGGCACAAAATGCATTTACCCC ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATATEST: gi|32939925|gb|CF044744.1|CF044744
genomic: ACAGCAAAGCTACTGAGAGAAGATTATTTGGCACAAAATGCATTTACCCCgtgagtcccc ... ttaatattagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATAT
EST: ACAGCAAAGCTACTGAGAGAAGATTATTTGGCACAAAATGCATTTACCCC ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGC-CAATATEST: gi|211532168|gb|FL123442.1|FL123442
genomic: ACAGCAAAGCTACTGAGAGAAGATTATTTGGCACAAAATGCATTTACCCCgtgagtcccc ... ttaatattagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATAT
EST: ACAGCAAAGCTACTGAGAGAAGATTATTTGGCACAAAATGCATTTACCCC ATATGATAAGTTCTGCCCATTCTACAAATCCGTTEST: gi|211152801|gb|FL123511.1|FL123511
genomic: ACAGCAAAGCTACTGAGAGAAGATTATTTGGCACAAAATGCATTTACCCCgtgagtcccc ... ttaatattagATATGATAAGTTCTGCCCATTCTACAAATCCGTT
EST: ACAGCRAAGCTACTGAGAGAAGATTATTTGGCACAAAATGCATTTACCCC ATATGAWAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATATEST: gi|5847131|gb|AW000210.1|AW000210
genomic: ACAGCAAAGCTACTGAGAGAAGATTATTTGGCACAAAATGCATTTACCCCgtgagtcccc ... ttaatattagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATAT
EST: ACAGCAAAGCTACTGAGAGAAGATTATTTGGCACAAAATGCATTTACCCC ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATATEST: gi|5804554|gb|AI979524.1|AI979524
genomic: ACAGCAAAGCTACTGAGAGAAGATTATTTGGCACAAAATGCATTTACCCCgtgagtcccc ... ttaatattagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATAT
EST: AAAATGCATTTACCCC ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATATEST: gi|33092495|gb|CF052489.1|CF052489
genomic: AAAATGCATTTACCCCgtgagtcccc ... ttaatattagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATAT
EST: ACAGCAAAGCTACTGAGAGAAGATTATTTGGCACAAAATGCATTTACCCC ATATGATAAAATCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATATEST: gi|5846817|gb|AI999900.1|AI999900
genomic: ACAGCAAAGCTACTGAGAGAAGATTATTTGGCACAAAATGCATTTACCCCgtgagtcccc ... ttaatattagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATAT
EST: ACAGCAAAGCTACTGAGAGAAGATTATTTGGCACAAAATGCATTTACCCC ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATATEST: gi|5846863|gb|AI999946.1|AI999946
genomic: ACAGCAAAGCTACTGAGAGAAGATTATTTGGCACAAAATGCATTTACCCCgtgagtcccc ... ttaatattagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATAT
EST: ACAGCAAAGCTACTGAGAGAAGATTATTTGGCACAAAATGCATTTACCCC ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATATEST: gi|67040096|gb|CO466351.1|CO466351
genomic: ACAGCAAAGCTACTGAGAGAAGATTATTTGGCACAAAATGCATTTACCCCgtgagtcccc ... ttaatattagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATAT
EST: ACAGCAAAGCTACTGAGAGAAGATTATTTGGCACAAAATGCATTTACCCC ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATATEST: gi|149076737|gb|EE165383.2|EE165383
genomic: ACAGCAAAGCTACTGAGAGAAGATTATTTGGCACAAAATGCATTTACCCCgtgagtcccc ... ttaatattagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATAT
EST: ACAGCAAAGCTACTGAGAGAAGATTATTTGGCACAAAATGCATTTACCCC ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATATEST: gi|32836684|gb|CD976362.1|CD976362
genomic: ACAGCAAAGCTACTGAGAGAAGATTATTTGGCACAAAATGCATTTACCCCgtgagtcccc ... ttaatattagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATAT
EST: ACAGCAAAGCTACTGAGAGAAGATTATTTGGCACAAAATGCATTTACCCC ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATATEST: gi|83278503|gb|DV942511.1|DV942511
genomic: ACAGCAAAGCTACTGAGAGAAGATTATTTGGCACAAAATGCATTTACCCCgtgagtcccc ... ttaatattagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATAT
EST: ACAGCAAAGCTACTGAGAGAAGATTATTTGGCACAAAATGCATTTACCCC ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATATEST: gi|5343199|gb|AI795384.1|AI795384
genomic: ACAGCAAAGCTACTGAGAGAAGATTATTTGGCACAAAATGCATTTACCCCgtgagtcccc ... ttaatattagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATAT
EST: ACAGCAAAGCTACTGAGAGAAGATTATTTGGCACAAAATGCATTTACCCC ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATATEST: gi|5296225|gb|AI782905.1|AI782905
genomic: ACAGCAAAGCTACTGAGAGAAGATTATTTGGCACAAAATGCATTTACCCCgtgagtcccc ... ttaatattagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATAT
EST: ACAGCAAAGCTACTGAGAGAAGATTATTTGGCACAAAATGCATTTACCCC ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATATEST: gi|5325051|gb|AI783242.1|AI783242
genomic: ACAGCAAAGCTACTGAGAGAAGATTATTTGGCACAAAATGCATTTACCCCgtgagtcccc ... ttaatattagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATAT
EST: ACAGCAAAGCTACTGAGAGAAGATTATTTGGCACAAAATGCATTTACCCC ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATATEST: gi|211156008|gb|FL123543.1|FL123543
genomic: ACAGCAAAGCTACTGAGAGAAGATTATTTGGCACAAAATGCATTTACCCCgtgagtcccc ... ttaatattagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATAT
EST: ACAGCAAAGCTACTGAGAGAAGATTATTTGGCACAAAATGCATTTACCCC ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATATEST: gi|32910829|gb|CF015641.1|CF015641
genomic: ACAGCAAAGCTACTGAGAGAAGATTATTTGGCACAAAATGCATTTACCCCgtgagtcccc ... ttaatattagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATAT
EST: ACAGCAAAGCTACTGAGAGAAGATTATTTGGCACAAAATGCATTTACCCC ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATATEST: gi|67025855|gb|CO454604.1|CO454604
genomic: ACAGCAAAGCTACTGAGAGAAGATTATTTGGCACAAAATGCATTTACCCCgtgagtcccc ... ttaatattagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATAT
EST: ACAGCAAAGCTACTGAGAGAAGATTATTTGGCACAAAATGCATTTACCCC ATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATAT
genomic: ACAGCAAAGCTACTGAGAGAAGATTATTTGGCACAAAATGCATTTACCCCgtgagtcccc ... ttaatattagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATAT
catatttctccattttattttttaaataattctgacaagtgttgtttaatattagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAG
attttattttttaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atactagaccaaaaatcaagattttgggtgttacaattttctactcatatttctccattttattttttaaataattctgacaagtgttgtttaatattagATATGATAAGTTCTGCCCATTCTACAAATCCGTTTGGATGATGCGCAATATTATTCACTTCAACACATTGGCAAATCAG
- - - -accaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttctgac