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gtactgtcaaagtagaatttgtcatcgtggtctatttgaatgataaaatggagagttttctgtaaaaaaaaatagctgatggattctgtaactttgcagCCATGGAAACTGAAGTAACAGAATTGACAGAACAGCAGAATGAAAACAAAGCGACAGAGGGAGCAAGCAAAAGAGGCGGACGAAAGAAGGCGTCATCATC
species | Zea mays |
transcript | GRMZM2G121210_T02 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: AGACCGTCTGGCAGCTTTTAATATCAGCGACTCCTCTCCGGATCATTCTG CCATGGAAACTGAAGTEST: gi|60359389|gb|DN226362.1|DN226362
genomic: AGACCGTCTGGCTGCTTTTAATATCAGCGACTCCTCTCCGGATCATTCTGgtactgtcaa ... aactttgcagCCATGGAAACTGAAGT
EST: AGACCGTCTGGCTGCTTTTAATATCAGCGACTCCTCTCCGGATCATTCTG CCATGGAAACTGAAGTAACAGAATTGACAGAACAGCAGAATGAAAACAAAGEST: gi|20803082|gb|BQ294132.1|BQ294132
genomic: AGACCGTCTGGCTGCTTTTAATATCAGCGACTCCTCTCCGGATCATTCTGgtactgtcaa ... aactttgcagCCATGGAAACTGAAGTAACAGAATTGACAGAACAGCAGAATGAAAACAAAG
EST: AGACCGTCTGGCTGCTTTTAATATCAGCGACTCCTCTCCGGATCATTCTG CCATGGAAACTGAAGTAACAGAATTGACAGAACAGCAGAATGAAAACAAAGEST: gi|31664432|gb|CD573365.1|CD573365
genomic: AGACCGTCTGGCTGCTTTTAATATCAGCGACTCCTCTCCGGATCATTCTGgtactgtcaa ... aactttgcagCCATGGAAACTGAAGTAACAGAATTGACAGAACAGCAGAATGAAAACAAAG
EST: AGACCGTCTGGCTGCTTTTAATATCAGCGACTCCTCTCCGGATCATTCTG CCATGGAAACTGAAGTAACAGAATTGACAGAACAGCAGAATGAAAAEST: gi|5343131|gb|AI795541.1|AI795541
genomic: AGACCGTCTGGCTGCTTTTAATATCAGCGACTCCTCTCCGGATCATTCTGgtactgtcaa ... aactttgcagCCATGGAAACTGAAGTAACAGAATTGACAGAACAGCAGAATGAAAA
EST: AGACCGTCTGGCTGCTTTTAATATCAGCGACTCCTCTCCGGATCATTCTG CCATGGAAACTGAAGTAACAGAATTGACAGAACAGCAGAATGAAAACAAAGEST: gi|76019915|gb|DT947085.1|DT947085
genomic: AGACCGTCTGGCTGCTTTTAATATCAGCGACTCCTCTCCGGATCATTCTGgtactgtcaa ... aactttgcagCCATGGAAACTGAAGTAACAGAATTGACAGAACAGCAGAATGAAAACAAAG
EST: AGCGACTCCTCTCCGGATCATTCTG CCATGGAAACTGAAGTAACAGAATTGACAGAACAGCAGAATGAAAACAAAG
genomic: AGCGACTCCTCTCCGGATCATTCTGgtactgtcaa ... aactttgcagCCATGGAAACTGAAGTAACAGAATTGACAGAACAGCAGAATGAAAACAAAG
aaaatggagagttttctgtaaaaaaaaatagctgatggattctgtaactttgcagCCATGGAAACTGAAGTAACAGAATTGACAGAACAGCAGAATGAAAACAAAGCGACAGAGGGAGCAAGCAAAAGAGGCGGACGAAAGAAGGCGTCATCATC
ctgtaac putative branch site (score: 19)
agttttctgtaaaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactgtcaaagtagaatttgtcatcgtggtctatttgaatgataaaatggagagttttctgtaaaaaaaaatagctgatggattctgtaactttgcagCCATGGAAACTGAAGTAACAGAATTGACAGAACAGCAGAATGAAAACAAAGCGACAGAGGGAGCAAGCAAAAGAGGCGGACGAAAGAAGGCGTCATCATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG