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...agtacattatatttcaaaggcatgcatttgactgttacggcacccaccctgtgtccatatggattttgcttaactgtttaaacttggatgtctaccacagGTAAGAGCACGCTGCAGAAAAGAATGGGGGATATTTCAGACAAGGCTGGCTGATGCGGAGAAGGCTTATTACTTGGAGCGAGGCATCACACCCCCGAACT
species | Zea mays |
transcript | GRMZM2G119725_T02 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: CACTTGGCAACCAGGGCAAGTCAGATAATGGAAGACCACCATGGGAAGGG GTAAGAGCACGCTGCAGAAAAGAATGGGGGATATTTCAGACAAGGCTGGCTEST: gi|148928292|gb|EE284900.2|EE284900
genomic: CACTTGGCAACCAGGGCAAGTCAGATAATGGAAGACCACCATGGGAAGGGgtaaggcagt ... tctaccacagGTAAGAGCACGCTGCAGAAAAGAATGGGGGATATTTCAGACAAGGCTGGCT
EST: CACTTGGCAACCAGGGCAAGTCAGATAATGGAAGACCACCATGGGAAGGG GTAAGAGCACGCTGCAGAAAAGAATGGGGGATATTTCAGACAAGGCTGGCTEST: gi|16927462|gb|BM080531.1|BM080531
genomic: CACTTGGCAACCAGGGCAAGTCAGATAATGGAAGACCACCATGGGAAGGGgtaaggcagt ... tctaccacagGTAAGAGCACGCTGCAGAAAAGAATGGGGGATATTTCAGACAAGGCTGGCT
EST: CACTTGGCAACCAGGGCAAGTCAGATAATGGAAGACCCCCATGGGAAGGG GTAAGAGCACGCTGCAGAAAAGAATGGGGGATATTTCAGACAAGGCTGGCTEST: gi|60338690|gb|DN205663.1|DN205663
genomic: CACTTGGCAACCAGGGCAAGTCAGATAATGGAAGACCACCATGGGAAGGGgtaaggcagt ... tctaccacagGTAAGAGCACGCTGCAGAAAAGAATGGGGGATATTTCAGACAAGGCTGGCT
EST: CACTTGGCAACCAGGGCAAGTCAGATAATGGAAGACCACCATGGGAAGGG GTAAGAGCACGCTGCAGAAAAGAATGGGGGATATTTCAGACAAGGCTGGCTEST: gi|74234754|gb|DT642668.1|DT642668
genomic: CACTTGGCAACCAGGGCAAGTCAGATAATGGAAGACCACCATGGGAAGGGgtaaggcagt ... tctaccacagGTAAGAGCACGCTGCAGAAAAGAATGGGGGATATTTCAGACAAGGCTGGCT
EST: CACTTGGCAACCAGGGCAAGTCAGATAATGGAAGACCACCATGGGAAGGG GTAAGAGCACGCTGCAGAAAAGAATGGGGGATATTTCAGACAAGGCTGGCTEST: gi|71427884|gb|DR808934.1|DR808934
genomic: CACTTGGCAACCAGGGCAAGTCAGATAATGGAAGACCACCATGGGAAGGGgtaaggcagt ... tctaccacagGTAAGAGCACGCTGCAGAAAAGAATGGGGGATATTTCAGACAAGGCTGGCT
EST: CACTTGGCAACCAGGGCAAGTCAGATAATGGAAGACCACCATGGGAAGGG GTAAGAGCACGCTGCAGAAAAGAATGGGGGATATTTCAGACAAGGCTGGCTEST: gi|78073793|gb|DV502227.1|DV502227
genomic: CACTTGGCAACCAGGGCAAGTCAGATAATGGAAGACCACCATGGGAAGGGgtaaggcagt ... tctaccacagGTAAGAGCACGCTGCAGAAAAGAATGGGGGATATTTCAGACAAGGCTGGCT
EST: CACTTGGCAACCAGGGCAAGTCAGATAATGGAAGACCCCCATGGGAAGGG GTAAGAGCACGCTGCAGAAAAGAATGGGGGATATTTCAGACAAGGCTGGGTEST: gi|74234755|gb|DT642669.1|DT642669
genomic: CACTTGGCAACCAGGGCAAGTCAGATAATGGAAGACCACCATGGGAAGGGgtaaggcagt ... tctaccacagGTAAGAGCACGCTGCAGAAAAGAATGGGGGATATTTCAGACAAGGCTGGCT
EST: CACTTGGCAACCAGGGCAAGTCAGATAATGGAAGACCACCATGGGAAGGG GTAAGAGCACGCTGCAGAAAAGAATGGGGGATATTTCAGACAAGGCTGGCTEST: gi|149108357|gb|EE292695.2|EE292695
genomic: CACTTGGCAACCAGGGCAAGTCAGATAATGGAAGACCACCATGGGAAGGGgtaaggcagt ... tctaccacagGTAAGAGCACGCTGCAGAAAAGAATGGGGGATATTTCAGACAAGGCTGGCT
EST: CACTTGGCAACCAGGGCAAGTCAGATAATGGAAGACCACCATGGGAAGGG GTAAGAGCACGCTGCAGAAAAGAATGGGGGATATTTCAGACAAGGCTGGCTEST: gi|71427883|gb|DR808933.1|DR808933
genomic: CACTTGGCAACCAGGGCAAGTCAGATAATGGAAGACCACCATGGGAAGGGgtaaggcagt ... tctaccacagGTAAGAGCACGCTGCAGAAAAGAATGGGGGATATTTCAGACAAGGCTGGCT
EST: TAATGGAAGACCTCCATGGGGAAGGG GTAAGAGCACGCTCCAGAAAAGAATGGGGGATATTTCAGACAAGGCTGGC
genomic: TAATGGAAGACCACCAT-GGGAAGGGgtaaggcagt ... tctaccacagGTAAGAGCACGCTGCAGAAAAGAATGGGGGATATTTCAGACAAGGCTGGC
accctgtgtccatatggattttgcttaactgtttaaacttggatgtctaccacagGTAAGAGCACGCTGCAGAAAAGAATGGGGGATATTTCAGACAAGGCTGGCTGATGCGGAGAAGGCTTATTACTTGGAGCGAGGCATCACACCCCCGAACT
gcttaac putative branch site (score: 3)
tttaaactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agtacattatatttcaaaggcatgcatttgactgttacggcacccaccctgtgtccatatggattttgcttaactgtttaaacttggatgtctaccacagGTAAGAGCACGCTGCAGAAAAGAATGGGGGATATTTCAGACAAGGCTGGCTGATGCGGAGAAGGCTTATTACTTGGAGCGAGGCATCACACCCCCGAACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG