Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttttggttctcgacttctcgtaccactctagtagctttcaatattgaatgcttgatggccacagttgtcctcacttgcgttgtttgtttgataacttcagGGTAAGACTAAGGTGGACAAGATAACGTCTTCCGTGGTACTTCCTTTTCATCATTTCTCAGGTGGTGCAAAACTTTCATCAGCCGCCCTTCCAGCGAAAG

Basic information

species Zea mays
transcript GRMZM2G118917_T01
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G118917_T01 (Zea mays), 3'ss of exon 13
lower sequence: LOC_Os10g30100.1 (Oryza sativa), 3'ss of exon 13
---ttttggttctcgacttctcgtaccactctagtagctttcaatattgaatgcttgatggccacagttgtcctcacttgcgttgtttgtttgataacttcagGGTAAGACTAAGGTGGACAAGATAACGTCTTCCGTGGTACTTCCTTTTCATCATTTCTCAGGTGGTGCAAAACTTTCATCAGCCGCCCTTCCAGCGAAAG------
   ||||||  |   |  || |       ||   |   ||||  |    || || |     ||| ||    ||| |||  | |    | | | | || | |||  || |      |||||||||||||  ||||| |||| ||||||||| ||| ||||||  || |||||||||  | |  |  |   | |||||  | |||      
cacttttggaacaaaaagtcactagttcttcccat---tttcctttggaaaagcctagaaaccagagcaaccctgactaacctcagatctgttaaaattgcagAATATG------GTGGACAAGATAAAATCTTCAGTGGCACTTCCTTTCCATAATTTCTGTGGCGGTGCAAAATCTCCGGCCACTAGCATTCCATTGGAAGAATCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78109406|gb|DV527822.1|DV527822
EST:     CAGCTGCTGGAAGAAGGCCAGATCTTTTCCTAGGATTTTCAA-TGTTCAG                         GGTAAGACTA-GGTGG
genomic: CAGCTGCTGGAAGAAGGCCAGATCTTTTCCTAGGATTTTCAAATGTTCAGgtattatcta ... ataacttcagGGTAAGACTAAGGTGG
EST: gi|32933312|gb|CF038124.1|CF038124
EST:     CAGCTGCTGGAAGAAGGCCAGATCTTTTCCTAGGATTTTCAAATGTTCAG                         GGTAAGACTAAGGTGGACAAGATAACGTCTTCCGTGGT
genomic: CAGCTGCTGGAAGAAGGCCAGATCTTTTCCTAGGATTTTCAAATGTTCAGgtattatcta ... ataacttcagGGTAAGACTAAGGTGGACAAGATAACGTCTTCCGTGGT
EST: gi|211340621|gb|FL361359.1|FL361359
EST:     GCTGCTGGAAGAAGGCCAGATCTTTTCCTAGGATTTTCAAATGTTCAG                         GGTAAGACTAAGGTGGACAAGATAACGTCTTCCGTGGTACTTCCTTTTCAT
genomic: GCTGCTGGAAGAAGGCCAGATCTTTTCCTAGGATTTTCAAATGTTCAGgtattatcta ... ataacttcagGGTAAGACTAAGGTGGACAAGATAACGTCTTCCGTGGTACTTCCTTTTCAT
EST: gi|60337067|gb|DN204040.1|DN204040
EST:     CAGCTGCTGGAAGAAGGCCAGATCTTTTCCTAGGATTTTCAAATGTTCAG                         GGTAAGACTAAGGTGGACAAGATAACGTCTTCCGTGGTACTTCCTTTTCAT
genomic: CAGCTGCTGGAAGAAGGCCAGATCTTTTCCTAGGATTTTCAAATGTTCAGgtattatcta ... ataacttcagGGTAAGACTAAGGTGGACAAGATAACGTCTTCCGTGGTACTTCCTTTTCAT
EST: gi|26456572|gb|CA828155.1|CA828155
EST:     CAGCTGCTGGAAGAAGGCCAGATCTTTTCCTAGGATTTTCAAATGTTCAG                         GGTAAGACTAAGGTGGACAAGATAACGTCTTCCGTGGTACTTCCTTTTCAT
genomic: CAGCTGCTGGAAGAAGGCCAGATCTTTTCCTAGGATTTTCAAATGTTCAGgtattatcta ... ataacttcagGGTAAGACTAAGGTGGACAAGATAACGTCTTCCGTGGTACTTCCTTTTCAT
EST: gi|211193425|gb|FL343339.1|FL343339
EST:     CAGCTGCTGGAAGAAGGCCAGATCTTTTCCTAGGATTTTCAAATGTTCAG                         GGTAAGACTAAGGTGGACAAGATAACGTCTTCCGTGGTACTTCCTTTTCAT
genomic: CAGCTGCTGGAAGAAGGCCAGATCTTTTCCTAGGATTTTCAAATGTTCAGgtattatcta ... ataacttcagGGTAAGACTAAGGTGGACAAGATAACGTCTTCCGTGGTACTTCCTTTTCAT
EST: gi|20301496|gb|BQ164439.1|BQ164439
EST:     CAGCTGCTGGAAGAAGGCCAGATCTTTTCCTAGGATTTTCAAATGTTCAG                         GGTAAGACTAAGGTGGACAAGATAACGTCTTCCGTGGTACTTCCTTTGCAT
genomic: CAGCTGCTGGAAGAAGGCCAGATCTTTTCCTAGGATTTTCAAATGTTCAGgtattatcta ... ataacttcagGGTAAGACTAAGGTGGACAAGATAACGTCTTCCGTGGTACTTCCTTTTCAT
EST: gi|211301949|gb|FL333158.1|FL333158
EST:     CAGCTGCTGGAAGAAGGCCAGATCTTTTCCTAGGATTTTCAAATGTTCAG                         GGTAAGACTAAGGTGGACAAGATAACGTCTTCCGTGGTACTTCCTTTTCAT
genomic: CAGCTGCTGGAAGAAGGCCAGATCTTTTCCTAGGATTTTCAAATGTTCAGgtattatcta ... ataacttcagGGTAAGACTAAGGTGGACAAGATAACGTCTTCCGTGGTACTTCCTTTTCAT
EST: gi|78108318|gb|DV526736.1|DV526736
EST:     CAGCTGCTGGAAGAAGGCCAGATCTTTTCCTAGGATTTTCAAATGTTCAG                         GGTAAGACTAAGGTGGACAAGATAACGTCTTCCGTGGTACTTCCTTTTCAT
genomic: CAGCTGCTGGAAGAAGGCCAGATCTTTTCCTAGGATTTTCAAATGTTCAGgtattatcta ... ataacttcagGGTAAGACTAAGGTGGACAAGATAACGTCTTCCGTGGTACTTCCTTTTCAT
EST: gi|60396058|gb|DN228927.1|DN228927
EST:     CAGCTGCTGGAAGAAGGCCAGATCTTTTCCTAGGATTTTCAAATGTTCAG                         GGTAAGACTAAGGTGGACAAGATAACGTCTTCCGTGGTACTTCCTTTTCAT
genomic: CAGCTGCTGGAAGAAGGCCAGATCTTTTCCTAGGATTTTCAAATGTTCAGgtattatcta ... ataacttcagGGTAAGACTAAGGTGGACAAGATAACGTCTTCCGTGGTACTTCCTTTTCAT
EST: gi|211248404|gb|FL329614.1|FL329614
EST:     CAGCTGCTGGAAGAAGGCCAGATCTTTTCCTAGGATTTTCAAATGTTCAG                         GGTAAGACTAAGGTGGACAAGATAACGTCTTCCGTGGTACT
genomic: CAGCTGCTGGAAGAAGGCCAGATCTTTTCCTAGGATTTTCAAATGTTCAGgtattatcta ... ataacttcagGGTAAGACTAAGGTGGACAAGATAACGTCTTCCGTGGTACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaatgcttgatggccacagttgtcctcacttgcgttgtttgtttgataacttcagGGTAAGACTAAGGTGGACAAGATAACGTCTTCCGTGGTACTTCCTTTTCATCATTTCTCAGGTGGTGCAAAACTTTCATCAGCCGCCCTTCCAGCGAAAG
                                           tgataac  putative branch site (score: 2)
                                         tttgataa  TA-rich tract