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...tcttgaataaagaaatagattaaggttctaaacgagagtatcttgagcaattcgttttaagaccatgcatcgctaatcagtcctttgttttaattttcagCTTTGCACTGGAATAGATGAGAAATCTGTGGGTTCCTCCTTCCAGCTTGTGTTTGCACCAATTGATGAGCATTTCCCAGATGATGCTCCATTGATTTCTT
species | Zea mays |
transcript | GRMZM2G109987_T05 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: CTCTTACTCATGATGAAGCTCTTCTTTCAAGGGACATCCACCTTCTCCAG CTTTGCACTGGAATAGATGAGAAATCTGTGGGTTCCTCCTTCCAGCTTGTGEST: gi|211357661|gb|FL143936.1|FL143936
genomic: CTCTTACTCATGATGAAGCTCTTCTTTCAAGGGACATCCACCTTCTCCAGgtaaatattt ... taattttcagCTTTGCACTGGAATAGATGAGAAATCTGTGGGTTCCTCCTTCCAGCTTGTG
EST: CTCTTACTCATGATGAAGCTCTTCTTTCAAGGGACATCCACCTTCTCCAG CTTTGCACTGGAATAGATGAGAAATCTGTGGRTTCCTCCTTCCAGCTTGTGEST: gi|31350140|gb|CD434497.1|CD434497
genomic: CTCTTACTCATGATGAAGCTCTTCTTTCAAGGGACATCCACCTTCTCCAGgtaaatattt ... taattttcagCTTTGCACTGGAATAGATGAGAAATCTGTGGGTTCCTCCTTCCAGCTTGTG
EST: TCTTACTCATCATTAAGCTCTTCTTTCAAGGGACATCCACCTTCTCCAG CTTTGCACTGGAATAGATGAGAAATCTGTGGGTTCCTCCTTCCAGCTTGTGEST: gi|50334712|gb|CO529838.1|CO529838
genomic: TCTTACTCATGATGAAGCTCTTCTTTCAAGGGACATCCACCTTCTCCAGgtaaatattt ... taattttcagCTTTGCACTGGAATAGATGAGAAATCTGTGGGTTCCTCCTTCCAGCTTGTG
EST: CTCTTACTCATGATGAAGCTCTTCTTTCAAGGGACATCCACCTTCTCCAG CTTTGCACTGGAATAGATGAGAAATCTGTGGGTTCCTCCTTCCAGCTTGTGEST: gi|93012109|gb|EB637629.1|EB637629
genomic: CTCTTACTCATGATGAAGCTCTTCTTTCAAGGGACATCCACCTTCTCCAGgtaaatattt ... taattttcagCTTTGCACTGGAATAGATGAGAAATCTGTGGGTTCCTCCTTCCAGCTTGTG
EST: CTCTTACTCATGATGAAGCTCTTCTTTCAAGGGACATCCACCTTCTCCAG CTTTGCACTGGAATAGATGAGAAATCTGTGGGTTCEST: gi|60336823|gb|DN203796.1|DN203796
genomic: CTCTTACTCATGATGAAGCTCTTCTTTCAAGGGACATCCACCTTCTCCAGgtaaatattt ... taattttcagCTTTGCACTGGAATAGATGAGAAATCTGTGGGTTC
EST: CTCTTACTCATGATGAAGCTCTTCTTTCAAGGGACATCCACCTTCTCCAG CTTTGCACTGGAATAGATGAGAAATCTGTGGGTTCCTCCTTCCAGCTTGTG
genomic: CTCTTACTCATGATGAAGCTCTTCTTTCAAGGGACATCCACCTTCTCCAGgtaaatattt ... taattttcagCTTTGCACTGGAATAGATGAGAAATCTGTGGGTTCCTCCTTCCAGCTTGTG
agcaattcgttttaagaccatgcatcgctaatcagtcctttgttttaattttcagCTTTGCACTGGAATAGATGAGAAATCTGTGGGTTCCTCCTTCCAGCTTGTGTTTGCACCAATTGATGAGCATTTCCCAGATGATGCTCCATTGATTTCTT
ttttaat putative branch site (score: 144)
tcctttgtttt CT-rich tract
tttgttttaattttca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcttgaataaagaaatagattaaggttctaaacgagagtatcttgagcaattcgttttaagaccatgcatcgctaatcagtcctttgttttaattttcagCTTTGCACTGGAATAGATGAGAAATCTGTGGGTTCCTCCTTCCAGCTTGTGTTTGCACCAATTGATGAGCATTTCCCAGATGATGCTCCATTGATTTCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG