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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttgttgtaccttttgccacctcattgtgaatgtggatacatgttgaatgactggttaatatttgatctaatgttgagggtgtgttcttctatccatgcagATCAAAGGCAGTCAACTGGCCGAGGTGATGACAACAGCCAGTAGCGATGCAATTGACCTCATCTCA

Basic information

species Zea mays
transcript GRMZM2G108829_T03
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60349468|gb|DN216441.1|DN216441
EST:     GGCCTCAAGGATTGTCACTTGCAGAAGCAATGAAGTATCAGTTCCCACAG                         ATCAAAGGCAGTCAACTGGCCGAGGTGATGACAACAGCCAGTAGCGATGCA
genomic: GGCCTCAAGGATTGTCACTTGCAGAAGCAATGAAGTATCAGTTCCCACAGgtcaatattc ... atccatgcagATCAAAGGCAGTCAACTGGCCGAGGTGATGACAACAGCCAGTAGCGATGCA
EST: gi|32871065|gb|CF010747.1|CF010747
EST:     GGCCTCAAGGATTGTCACTTGCAGAAGCAATGAAGTATCAGTTCCCACAG                         ATCAAAGGCAGTCAACTGGCCGAGGTGATGACAACAGCCAGTAGC-ATGCA
genomic: GGCCTCAAGGATTGTCACTTGCAGAAGCAATGAAGTATCAGTTCCCACAGgtcaatattc ... atccatgcagATCAAAGGCAGTCAACTGGCCGAGGTGATGACAACAGCCAGTAGCGATGCA
EST: gi|32932540|gb|CF037352.1|CF037352
EST:     GGCCTCAAGGATTGTCACTTGCAGAAGCAATGAAGTATCAGTTCCCACAG                         ATCAAAGGCAGTCAACTGGCCGAGGTGATGACAACAGCCAGTAGCGATGCA
genomic: GGCCTCAAGGATTGTCACTTGCAGAAGCAATGAAGTATCAGTTCCCACAGgtcaatattc ... atccatgcagATCAAAGGCAGTCAACTGGCCGAGGTGATGACAACAGCCAGTAGCGATGCA
EST: gi|71304777|gb|DR788504.1|DR788504
EST:     GGCCTCAAGGATTGTCACTTGCAGAAGCAATGAAGTATCAGTTCCCACAG                         ATCAAAGGCAGTCAACTGGCCGAGGTGATGACAACAGCCAGTAGCGATGCA
genomic: GGCCTCAAGGATTGTCACTTGCAGAAGCAATGAAGTATCAGTTCCCACAGgtcaatattc ... atccatgcagATCAAAGGCAGTCAACTGGCCGAGGTGATGACAACAGCCAGTAGCGATGCA
EST: gi|211496287|gb|FL041699.1|FL041699
EST:     GGCCTCAAGGATTGTCACTTGCAGAAGCAATGAAGTATCAGTTCCCACAG                         ATCAAAGGCAGTCAACTGGCCGAGGTGATGACAACAGCCAGTAGCGATGCA
genomic: GGCCTCAAGGATTGTCACTTGCAGAAGCAATGAAGTATCAGTTCCCACAGgtcaatattc ... atccatgcagATCAAAGGCAGTCAACTGGCCGAGGTGATGACAACAGCCAGTAGCGATGCA
EST: gi|31350422|gb|CD434779.1|CD434779
EST:     GGCCTCAAGGATTGTCACTTGCAGAAGCAATGAAGTATCAGTTCCCACAG                         ATCAAAGGCAGTCAACTGGCCGAGGTGATGACCACAGCCAGTAGCGATGCA
genomic: GGCCTCAAGGATTGTCACTTGCAGAAGCAATGAAGTATCAGTTCCCACAGgtcaatattc ... atccatgcagATCAAAGGCAGTCAACTGGCCGAGGTGATGACAACAGCCAGTAGCGATGCA
EST: gi|32870331|gb|CF010013.1|CF010013
EST:     GGCCTCAAGGATTGTCACTTGCAGAAGCAATGAAGTATCAGTTCCCACAG                         ATCAAAGGCAGTCAACTGGCCGAGGTGATGACAACAGCCAGTAGCGATGCA
genomic: GGCCTCAAGGATTGTCACTTGCAGAAGCAATGAAGTATCAGTTCCCACAGgtcaatattc ... atccatgcagATCAAAGGCAGTCAACTGGCCGAGGTGATGACAACAGCCAGTAGCGATGCA
EST: gi|32869779|gb|CF009461.1|CF009461
EST:     GGCCTCAAGGATTGTCACTTGCAGAAGCAATGAAGTATCAGTTCCCACAG                         ATCAAAGGCAGTCAACTGGCCGAGGTGATGACAACAGCCAGTAGCGATGCA
genomic: GGCCTCAAGGATTGTCACTTGCAGAAGCAATGAAGTATCAGTTCCCACAGgtcaatattc ... atccatgcagATCAAAGGCAGTCAACTGGCCGAGGTGATGACAACAGCCAGTAGCGATGCA
EST: gi|67011156|gb|CO439905.1|CO439905
EST:     GGCCTCAAGGATTGTCACTTGCAGAAGCAATGAAGTATCAGTTCCCACAG                         ATCAAAGGCAGTCAACTGGCCGAGGTGATGACAACAGCCAGTAGCGATGCA
genomic: GGCCTCAAGGATTGTCACTTGCAGAAGCAATGAAGTATCAGTTCCCACAGgtcaatattc ... atccatgcagATCAAAGGCAGTCAACTGGCCGAGGTGATGACAACAGCCAGTAGCGATGCA
EST: gi|5932684|gb|AW057045.1|AW057045
EST:     GGCCTCAAGGATTGTCACTTGCAGAAGCAATGAAGTATCAGTTCCCACAG                         ATCAAAGGCAGTCAACTGGCCGAGGTGATGACAACAGCCAGTAGCGATGCA
genomic: GGCCTCAAGGATTGTCACTTGCAGAAGCAATGAAGTATCAGTTCCCACAGgtcaatattc ... atccatgcagATCAAAGGCAGTCAACTGGCCGAGGTGATGACAACAGCCAGTAGCGATGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatgactggttaatatttgatctaatgttgagggtgtgttcttctatccatgcagATCAAAGGCAGTCAACTGGCCGAGGTGATGACAACAGCCAGTAGCGATGCAATTGACCTCATCTCA
                   atctaat  putative branch site (score: 3)
                                      ttcttctatcc  putative PPT
         ttaatatttgatctaa  TA-rich tract