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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagcaatacgaacattgttctctacccttaataattatgttctttgttagttcacttagacatcgtaaaatccatttgagtaatgttagccctgaatgatcagGTTTCTTTGCTTCTGAAAGACAGTTTCATTGATTCGTTCCCCTCAAATGATAGACCATTTATAAAG

Basic information

species Zea mays
transcript GRMZM2G107651_T01
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G107651_T01 (Zea mays), 3'ss of exon 13
lower sequence: LOC_Os03g05200.2 (Oryza sativa), 3'ss of exon 15
gttagcaatacgaacattgttctctacccttaataattatgttctttgttagttcacttagacatcgtaaaatccatttgagtaatgttagccctgaatgatcagGTTTCTTTGCTTCTGAAAGACAGTTTCATTGATTCGTTCCCCTCAAATGATAGACCATTTATAAAG
|||||||||| ||||| || | |  ||  ||||| |||                     | ||| | |||| |||| |  | | || ||    ||   | |||||||||| |||||||| ||||||||||| || ||||| ||||||||||| ||  |||||||| |||||
gttagcaatatgaacactggtttgcact-ttaattattga-------------------aaacagcataaa-tccagtcaa-tgatatttcttctatcttatcagGTTTCGTTGCTTCTAAAAGACAGTTTTATCGATTCATTCCCCTCAAAGGACCGACCATTTGTAAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agttcacttagacatcgtaaaatccatttgagtaatgttagccctgaatgatcagGTTTCTTTGCTTCTGAAAGACAGTTTCATTGATTCGTTCCCCTCAAATGATAGACCATTTATAAAG
                                taatgtta  TA-rich tract