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...tctgacatctatttcaaaacacattttaactacaatgcctaggtggaatatggacctgtttcctagtcatatttcttgacgcttattttttttttcgcagGCCGAGAAGGACTTGCAGCCTTGGATTGCTAGAGATGACGAACAAGGTCAGAAGATGTGGAGAGTCAACCAGCGTATAGTGAAGCTTATAGCTGAGCTTA
species | Zea mays |
transcript | GRMZM2G107101_T05 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: TGTCGTTTCAGCCTCACCAACCAAAGCATCAGCTGCTATCGTTCTCCCAG -CCGAGAAGGACTTGCAGCCTTGGATTGCTACAGATGACGAACAAGGTCAEST: gi|211384284|gb|FL369285.1|FL369285
genomic: TGTCGTTTCAGCCTCACCAACCAAGGCATCAGCTGCTATCGTTCTCC-AGgtcaagatat ... tttttcgcagGCCGAGAAGGACTTGCAGCCTTGGATTGCTAGAGATGACGAACAAGGTCA
EST: ATGTCGTTTCAGCCTCACCAACCAAGGCATCAGCTGCTATCGTTCTCCAG GCCGAGAAGGACTTGCAGCCTTGGWTTGCTAGAGATGACGAACAAGGTCAGEST: gi|67013730|gb|CO442479.1|CO442479
genomic: ATGTCGTTTCAGCCTCACCAACCAAGGCATCAGCTGCTATCGTTCTCCAGgtcaagatat ... tttttcgcagGCCGAGAAGGACTTGCAGCCTTGGATTGCTAGAGATGACGAACAAGGTCAG
EST: ATGTCGTTTCAGCCTCACCAACCAAGGCATCAGCTGCTATCGTTCTCCAG GCCGAGAAAGACTTGCAGCCTTGGATTGCTAGAGATGACGAACAAGGTCAGEST: gi|32838215|gb|CD977893.1|CD977893
genomic: ATGTCGTTTCAGCCTCACCAACCAAGGCATCAGCTGCTATCGTTCTCCAGgtcaagatat ... tttttcgcagGCCGAGAAGGACTTGCAGCCTTGGATTGCTAGAGATGACGAACAAGGTCAG
EST: ATGTCGTTTCAGCCTCACCAACCAAGGCATCAGCTGCTATCGTTCTCCAG GCCGAGAAGGACTTGCAGCCTTGGATTGCTAGAGATGACGAACAAGGTCAGEST: gi|211421009|gb|FL393428.1|FL393428
genomic: ATGTCGTTTCAGCCTCACCAACCAAGGCATCAGCTGCTATCGTTCTCCAGgtcaagatat ... tttttcgcagGCCGAGAAGGACTTGCAGCCTTGGATTGCTAGAGATGACGAACAAGGTCAG
EST: ATGTCGTTTCAGCCTCACCAACCAAGGCATCAGCTGCTATCGTTCTCCAG GCCGAGAAGGACTTGCAGCCTTGGATTGCTAGAGATGACGAACAAGGTCAG
genomic: ATGTCGTTTCAGCCTCACCAACCAAGGCATCAGCTGCTATCGTTCTCCAGgtcaagatat ... tttttcgcagGCCGAGAAGGACTTGCAGCCTTGGATTGCTAGAGATGACGAACAAGGTCAG
gaatatggacctgtttcctagtcatatttcttgacgcttattttttttttcgcagGCCGAGAAGGACTTGCAGCCTTGGATTGCTAGAGATGACGAACAAGGTCAGAAGATGTGGAGAGTCAACCAGCGTATAGTGAAGCTTATAGCTGAGCTTA
tcttgac putative branch site (score: 3)
cgcttatttttttttt CT-rich tract
ttatttttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctgacatctatttcaaaacacattttaactacaatgcctaggtggaatatggacctgtttcctagtcatatttcttgacgcttattttttttttcgcagGCCGAGAAGGACTTGCAGCCTTGGATTGCTAGAGATGACGAACAAGGTCAGAAGATGTGGAGAGTCAACCAGCGTATAGTGAAGCTTATAGCTGAGCTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT