1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtgacatttcttccattcgtcagatttcgtaacaggagaattcttccaacaaaattctctgttctgttccattgtgctctgctgtcattaaacacgatcaagttaccatttccatgcactctttatctgctgactgtcgtttgtctggtggatacatgcagCTTCTGGAAGTGACCGCTCGGGCTGTCCATCTTATCATCGAATGGGGAGATTCAGGTTTATCAGTTGCAGATGGTCTTTCAAATCTGCTGAAG
species | Zea mays |
transcript | GRMZM2G107101_T01 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: CCGATGGAATGCTCGTCGATGGTGAAGCTTGTACTTTGCCACAGCTTGAG CTTCTGGAAG-GACCGCTCGGGCTGEST: gi|211161328|gb|FL392793.1|FL392793
genomic: CCGATGGAATGCTCGTCGATGGTGAAGCTTGTACTTTGCCACAGCTTGAGgtgacatttc ... atacatgcagCTTCTGGAAGTGACCGCTCGGGCTG
EST: CCGATGGAATGCTCGTCGATGGTGAAGCTTGTACTTTGCCACAGCTTGAG CTTCTGGAAGTGACCGCTCGGGCTGTCCATCTTATCATCGAATGGGGAGAT
genomic: CCGATGGAATGCTCGTCGATGGTGAAGCTTGTACTTTGCCACAGCTTGAGgtgacatttc ... atacatgcagCTTCTGGAAGTGACCGCTCGGGCTGTCCATCTTATCATCGAATGGGGAGAT
catttccatgcactctttatctgctgactgtcgtttgtctggtggatacatgcagCTTCTGGAAGTGACCGCTCGGGCTGTCCATCTTATCATCGAATGGGGAGATTCAGGTTTATCAGTTGCAGATGGTCTTTCAAATCTGCTGAAG
tgctgac putative branch site (score: 2)
tctttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgacatttcttccattcgtcagatttcgtaacaggagaattcttccaacaaaattctctgttctgttccattgtgctctgctgtcattaaacacgatcaagttaccatttccatgcactctttatctgctgactgtcgtttgtctggtggatacatgcagCTTCTGGAAGTGACCGCTCGGGCTGTCCATCTTATCATCGAATGGGGAGATTCAGGTTTATCAGTTGCAGATGGTCTTTCAAATCTGCTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG