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gtatatcttcattcaaaaatagaaactgttgtttgttctggaagaccaatattgcagctgatatatgtttaaatcaatttgcagTATAGATAAAGGAGGAAAGGAATTGATTGTTGCTGTAAGTTTTAGTCTTGAAGCTTCTGAAGCTGTAGCTGAGCTAAGGTCATCTTTTCAGTTGAAGCGT
species | Zea mays |
transcript | GRMZM2G106931_T01 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: CCAGTGCTAAGAATTGAAGGTAGTCACTTACTAGCAGCTGTCGTAGTCAG TATAGATAAAGGAGGAAAGGAATTGATTGTTGCTGTAAGTTTTAGTCTTGAEST: gi|31359063|gb|CD443420.1|CD443420
genomic: CCAGTGCTAAGAATTGAAGGTAGTCACTTACTAGCAGCTGTCGTAGTCAGgtatatcttc ... caatttgcagTATAGATAAAGGAGGAAAGGAATTGATTGTTGCTGTAAGTTTTAGTCTTGA
EST: CCAGTGCTAAGAATTGAAGGTAGTCACTTACTAGCAGCTGTCGTAGTCAG TATAGATAAAGGAGGAAAGGAATTGATTGTTGCTGTAAGTTTTAGTCTTGAEST: gi|211217077|gb|FL154223.1|FL154223
genomic: CCAGTGCTAAGAATTGAAGGTAGTCACTTACTAGCAGCTGTCGTAGTCAGgtatatcttc ... caatttgcagTATAGATAAAGGAGGAAAGGAATTGATTGTTGCTGTAAGTTTTAGTCTTGA
EST: CCAGTGCTAAGAATTGAAGGTAGTCACTTACTAGCAGCTGTCGTAGTCAG TATAGATAAAGGAGGAAAGGAATTGATTGTTGCTGTAAGTTTTAGTCTTGA
genomic: CCAGTGCTAAGAATTGAAGGTAGTCACTTACTAGCAGCTGTCGTAGTCAGgtatatcttc ... caatttgcagTATAGATAAAGGAGGAAAGGAATTGATTGTTGCTGTAAGTTTTAGTCTTGA
tgtttgttctggaagaccaatattgcagctgatatatgtttaaatcaatttgcagTATAGATAAAGGAGGAAAGGAATTGATTGTTGCTGTAAGTTTTAGTCTTGAAGCTTCTGAAGCTGTAGCTGAGCTAAGGTCATCTTTTCAGTTGAAGCGT
agctgat putative branch site (score: 101)
tgatatatgtttaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatatcttcattcaaaaatagaaactgttgtttgttctggaagaccaatattgcagctgatatatgtttaaatcaatttgcagTATAGATAAAGGAGGAAAGGAATTGATTGTTGCTGTAAGTTTTAGTCTTGAAGCTTCTGAAGCTGTAGCTGAGCTAAGGTCATCTTTTCAGTTGAAGCGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC