Sequence
atgc intronic sequence ATGC exonic sequencegcaagtaacacacatctcttccactgaggtttcttttcttcaaatacccatttctggatagtttctacttattccatgtattaactaattggcctgtcactgcagGTTTCAACTGAAGTATTTGGATCATTTGGCTATAGCGCCCCAGAGTTTGCAATGTCTGGCATTTATACTGTAAAGAGCGATGTATACAGTTTTGGAGTGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G103070_T01 (Zea mays), 3'ss of exon 13
lower sequence: LOC_Os02g09740.2 (Oryza sativa), 3'ss of exon 13
gcaagtaacac----acatctcttccactgaggtttcttt--tcttcaaatacccatttctggatagttt----ctacttattccatgtattaacta--attggcctgtcactgcagGTTTCAACTGAAGTATTTGGATCATTTGGCTATAGCGCCCCAGAGTTTGCAATGTCTGGCATTTATACTGTAAAGAGCGATGTATACAGTTTTGGAGTGG
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gtcagtcataccaccacatttctaaacttctggttgctaaagttctcagatggccttgtttggctcctgtagaagtagttaattaatggactgaatatgcttggtttgccattccagGTTTCAACTGAGGTGTTTGGCTCATTTGGATACAGTGCCCCGGAGTTTGCCATGTCAGGAATTTATACCGTAAAGAGTGATGTGTACAGTTTTGGAGTTG
upper sequence: GRMZM2G103070_T01 (Zea mays), 3'ss of exon 13
lower sequence: AT4G22130.2 (Arabidopsis thaliana), 3'ss of exon 8
gcaagtaacacacatctcttccactgaggtttcttttcttcaaatacccatttctgga-tagtttctacttattccatgtattaactaattggcctgtcactgcagGTTTCAACTGAAGTATTTGGATCATTTGGCTATAGCGCCCCAGAGTTTGCAATGTCTGGCATTTATACTGTAAAGAGCGATGTATACAGTTTTGGAGTGG
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----------------------------gtaataacaatggaaagaatcagatttaatctaattgaaacattttctgagtctttcatggtttatgcatgtcaacagGTTTCAACTCAAGTGGTAGGTTCATTTGGATACAGCGCTCCAGAGTTTGCACTGTCGGGAATTTACACAGTGAAAAGTGATGTATACACTTTTGGAGTAG
upper sequence: GRMZM2G103070_T01 (Zea mays), 3'ss of exon 13
lower sequence: EFJ07060 (Selaginella moellendorffii), 3'ss of exon 3
gcaagtaacacacatctcttccactgaggtttcttttcttcaaatacccatttctggatagtttctacttattccatgtattaactaattggcctgtcactgcagGTTTCAACTGAAGTATTTGGATCATTTGGCTATAGCGCCCCAGAGTTTGCAATGTCTGGCATTTATACTGTAAAGAGCGATGTATACAGTTTTGGAGTGG
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-------------------------------gtatccatctcacttttcttttcagtctcgtctttaatctcttttcttctttctcgatcgtcct--tattgcagGTTTCTTCGCAAATGCTGGTCTCTTTTGGCTACAGCGCGCCGGAGTTTGCCATGTCTGGCGTGTACACTGTCAAGAGCGATGTTTACAGCTTTGGAGTGG
upper sequence: GRMZM2G103070_T01 (Zea mays), 3'ss of exon 13
lower sequence: EFJ34030 (Selaginella moellendorffii), 3'ss of exon 3
gcaagtaacacacatctcttccactgaggtttcttttcttcaaatacccatttctggatagtttctacttattccatgtattaactaattggcctgtcactgcagGTTTCAACTGAAGTATTTGGATCATTTGGCTATAGCGCCCCAGAGTTTGCAATGTCTGGCATTTATACTGTAAAGAGCGATGTATACAGTTTTGGAGTGG
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-------------------------------------gtctgaagaactagcgcttttaaattctcttttattcc-----tttgctgataggaaaaaactggcagGTTGCGGCACAAATGCTGGGTTCCTTTGGCTACAGTGCTCCGGAGTTTGCAATGTCTGGTGTTTATACCGTTAAAAGCGATGTGTACAGTTTTGGAGTGG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttctggatagtttctacttattccatgtattaactaattggcctgtcactgcagGTTTCAACTGAAGTATTTGGATCATTTGGCTATAGCGCCCCAGAGTTTGCAATGTCTGGCATTTATACTGTAAAGAGCGATGTATACAGTTTTGGAGTGG
atgtattaactaatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gcaagtaacacacatctcttccactgaggtttcttttcttcaaatacccatttctggatagtttctacttattccatgtattaactaattggcctgtcactgcagGTTTCAACTGAAGTATTTGGATCATTTGGCTATAGCGCCCCAGAGTTTGCAATGTCTGGCATTTATACTGTAAAGAGCGATGTATACAGTTTTGGAGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG