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...atctcaaaatacaattgggctggtttggggaattttccatagttttgctgtgaatcaactatgttacatccttgttgactttccactctgtcaattccagAGCTATAATCCTATGTCAGAACCATTTGATAACTGGGAAAACAAGTTTGACATAAGCCCAGAGCAAAATTCTCATCAACCAATGGAATTTGGTGAATTGG
species | Zea mays |
transcript | GRMZM2G098828_T01 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: ATGACATGTGTGAGTTTGCTGACAAGGATGACTATGCAGGAGTTGGATCT AGCTATAATCCTATGTCAGAACCATTTGATAACTGGGAAAACAAGTTTGACEST: gi|20208111|gb|BQ134215.1|BQ134215
genomic: ATGACATGTGTGAGTTTGCTGACAAGGATGACTATGCAGGAGTTGGATCTgtaagaattt ... tcaattccagAGCTATAATCCTATGTCAGAACCATTTGATAACTGGGAAAACAAGTTTGAC
EST: TGACATGTGTGATGTTTGCTGACAAGGATGACTATGCAGGAGTTGGATCT AGCTATAATCCTATGTCAGAACCATTTGATAACTGGGAAAACAAGTTTGACEST: gi|4572997|gb|AI586646.1|AI586646
genomic: TGACATGTGTGA-GTTTGCTGACAAGGATGACTATGCAGGAGTTGGATCTgtaagaattt ... tcaattccagAGCTATAATCCTATGTCAGAACCATTTGATAACTGGGAAAACAAGTTTGAC
EST: ATGACATGTGTGAGTTTGCTGACAAGGATGACTATGCAGGAGTTGGATCT AGCTATAATCCTATGTCAGAACCATTTGATAACTGGGAAAACAAGTTTGACEST: gi|4573006|gb|AI586655.1|AI586655
genomic: ATGACATGTGTGAGTTTGCTGACAAGGATGACTATGCAGGAGTTGGATCTgtaagaattt ... tcaattccagAGCTATAATCCTATGTCAGAACCATTTGATAACTGGGAAAACAAGTTTGAC
EST: ATGACATGTGTGAGTTTGCTGACAAGGATGACTATGCAGGAGTTGGATCT AGCTATAATCCTATGTCAGAACCATTTGATAACTGGGAAAACAAGTTTGAC
genomic: ATGACATGTGTGAGTTTGCTGACAAGGATGACTATGCAGGAGTTGGATCTgtaagaattt ... tcaattccagAGCTATAATCCTATGTCAGAACCATTTGATAACTGGGAAAACAAGTTTGAC
tgctgtgaatcaactatgttacatccttgttgactttccactctgtcaattccagAGCTATAATCCTATGTCAGAACCATTTGATAACTGGGAAAACAAGTTTGACATAAGCCCAGAGCAAAATTCTCATCAACCAATGGAATTTGGTGAATTGG
tgttgac putative branch site (score: 16)
ctttccactctgtc CT-rich tract
tatgtta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atctcaaaatacaattgggctggtttggggaattttccatagttttgctgtgaatcaactatgttacatccttgttgactttccactctgtcaattccagAGCTATAATCCTATGTCAGAACCATTTGATAACTGGGAAAACAAGTTTGACATAAGCCCAGAGCAAAATTCTCATCAACCAATGGAATTTGGTGAATTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - -aatacaa
- - - - - - - -tgggctg
- - - - - - - - - - - - - - - - - - - - - -tttgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - aatcaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tacatcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgttga