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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtttccaactttccatcacaattgtttatcggacatgcttttccagttttgttaattgagctgtcttttcagATTTCCACCACAGGAATGGTCATTACTCTTGTTATTGTTTCTGTGTCATTTTTTGTGAAG

Basic information

species Zea mays
transcript GRMZM2G097768_T02
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G097768_T03 (Zea mays), 3'ss of exon 13
lower sequence: LOC_Os05g50280.1 (Oryza sativa), 3'ss of exon 12
----gttagtttccaactttccatcacaattgtttatcggacatgcttttccagttttgttaattgagctgtcttttcagATTTCCACCACAGGAATGGTCATTACTCTTGTTATTGTTTCTGTGTCATTTTTTGTGAAG
    |||   | || | |     |||    || |  |     | |  | |  | |||  ||| ||    | | ||| ||||| || || ||||| |||  ||||||||||||| ||||||||||||||||||||||||||
gttagttgcatccccattaattttcaggcatgctactttcgaa-gaatatataatttatttatttttattttttttccagATCTCTACTACAGGGATGACCATTACTCTTGTTGTTGTTTCTGTGTCATTTTTTGTGAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67016921|gb|CO445670.1|CO445670
EST:     GAGTGACAACCTGGTTGACTGACAAAGCTGGTCGAAGGCTTCTTCTCATT                         ATTTCCACCACAGGAATGGTCATTACTCTTGTTATTGTTTCTGTGTCATTT
genomic: GAGTGACAACCTGGTTGACTGACAAAGCTGGTCGAAGGCTTCTTCTCATTgttagtttcc ... gtcttttcagATTTCCACCACAGGAATGGTCATTACTCTTGTTATTGTTTCTGTGTCATTT
EST: gi|71772625|gb|DR970553.1|DR970553
EST:     GAGTGACAACCTGGTTGACTGACAAAGCTGGTCGAAGGCTTCTTCTCATT                         ATTTCCACCACAGGAATGGTCATTACTCTTGTTATTGTTTCTGTGTCATTT
genomic: GAGTGACAACCTGGTTGACTGACAAAGCTGGTCGAAGGCTTCTTCTCATTgttagtttcc ... gtcttttcagATTTCCACCACAGGAATGGTCATTACTCTTGTTATTGTTTCTGTGTCATTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acaattgtttatcggacatgcttttccagttttgttaattgagctgtcttttcagATTTCCACCACAGGAATGGTCATTACTCTTGTTATTGTTTCTGTGTCATTTTTTGTGAAG
                                tgttaat  putative branch site (score: 3)
                                           ctgtcttttc  putative PPT
                             ttttgttaatt  TA-rich tract