Sequence
atgc intronic sequence ATGC exonic sequencegtaagatattgtatcgtcaaatgattattatcttgtttctttttccttttacccaccttgtgatgcatggcgttataaacaaaatgactatgatatgtgctttttagAGAGATGTTGTTGCTTCTTATCTAGAAGGTGGAAAGCCTGTGGATGAAGGTGTCGAAGATGCTTTTGAGCTGCTTCACGAGGTCAATGAGCGAGTGAGAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G095348_T03 (Zea mays), 3'ss of exon 14
lower sequence: LOC_Os06g05180.1 (Oryza sativa), 3'ss of exon 14
gtaagatattgtatcgtc-aaatgattattatcttgtttctttt-tccttttacccaccttgtgatgcatgg----------cgttataa-acaaa---atgactatgatatgtgctttt-tagAGAGATGTTGTTGCTTCTTATCTAGAAGGTGGAAAGCCTGTGGATGA---AGGTGTCGAAGATGCTTTTGAGCTGCTTCACGAGGTCAATGAGCGAGTGAGAA
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gtaagttattgtattatctaaatgttcattatgttatttcttttctcctcttgaatgtgttattgcgtgaaagttctttttttaccatggcatgaagttatgtttgtaatttgtgttcctacagAGAGATGTCGTTGCGTCTTATCTAGAATCTGGAAAACCTGTGGATGAGGAAGGCGTTGAAGATGCTTTTGAGCTGCTTCATGAGGTTAATGAGCGAGTGC---
upper sequence: GRMZM2G095348_T03 (Zea mays), 3'ss of exon 14
lower sequence: GLYMA13G43680.2 (Glycine max), 3'ss of exon 14
------------------------------gta-agatattgtatcgtcaaatgattattatcttgtttctttttccttttacccaccttgtgatgcatgg--cgttataaacaa--------aatgactatgatatgtgctttt-tagAGAGATGTTGTTGCTTCTTATCTAGAAGGTGGAAAGCCTGTGGATGA---AGGTGTCGAAGATGCTTTTGAGCTGCTTCACGAGGTCAATGAGCGAGTGAGAA
|| |||| ||| | | | | | ||| ||| ||| | || | || | | | | | | | ||| | || | | ||| | || || || | |||||||||| || || |||| |||||| ||||| ||||| |||||| ||||||||||||||||| | || || | ||||| || || |
gtgaggactctcatgaacttcatcttttccttatagatgttggcttgctt--tcaagaatattttgccccttactatttctgccgaatgtatatttgacagatctttactggtagtgccctttaaacattttgacttccactattgcagCGTGATGTTGTTGTATCACATTTAGATAGTGGAAGACCTGTAGATGATGAAGGTGTTGAAGATGCTTTTGAGCTCTTACATGAAATGAATGAACGTGTCA---
upper sequence: GRMZM2G095348_T03 (Zea mays), 3'ss of exon 14
lower sequence: GLYMA15G01680.1 (Glycine max), 3'ss of exon 14
---------------------------------------------------gtaagatattgtatcgtc--------aaatgattattatct-tgtttctttttccttttacccaccttgtgatgcatggcgttataaacaaaatgactatgatatgtgctttttagAGAGATGTTGTTGCTTCTTATCTAGAAGGTGGAAAGCCTGTGGATGA---AGGTGTCGAAGATGCTTTTGAGCTGCTTCACGAGGTCAATGAGCGAGTGAGAA
| | | || | | | | | | || | || | | | |||| | ||| | | || | ||||| | ||||| || || || | |||||||||| || || |||| |||||| ||||| ||||| |||||| ||||||||||||||||| | || || | ||||| || || |
gtgaggattttcgtgaacttcatcttttccttatagttgttggcttgctttgaagaacatcccaccccctccccccaacacacacacaatttctgctgaatgtatattttgtagatctttactggtagtgcccttgaaacatattgacttccat-----tattgcagCGTGATGTTGTTGTATCACATTTAGATAGTGGAAGACCTGTAGATGATGAAGGTGTTGAAGATGCTTTTGAGCTCTTACATGAAATGAATGAACGTGTCA--- atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ccaccttgtgatgcatggcgttataaacaaaatgactatgatatgtgctttttagAGAGATGTTGTTGCTTCTTATCTAGAAGGTGGAAAGCCTGTGGATGAAGGTGTCGAAGATGCTTTTGAGCTGCTTCACGAGGTCAATGAGCGAGTGAGAA
tgcttttt CT-rich tract
ttataaacaaaatga TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagatattgtatcgtcaaatgattattatcttgtttctttttccttttacccaccttgtgatgcatggcgttataaacaaaatgactatgatatgtgctttttagAGAGATGTTGTTGCTTCTTATCTAGAAGGTGGAAAGCCTGTGGATGAAGGTGTCGAAGATGCTTTTGAGCTGCTTCACGAGGTCAATGAGCGAGTGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT