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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctgttgcgagtgaaataaattcgtaagttagttctttttcagacccccaaaacttaatgttctgttccttattgcacagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGAGCATATGACACACGGAACATCTTCCAGTCACTCGATCTTGCATGGACAT

Basic information

species Zea mays
transcript GRMZM2G094497_T02
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G094497_T02 (Zea mays), 3'ss of exon 13
lower sequence: LOC_Os06g37180.1 (Oryza sativa), 3'ss of exon 14
gtctgttgcgagtga-----aataaattcgtaagttagt-tctttttcagacccccaaaacttaatgttctgttccttattgcacagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGAGCATATGACACACGGAACATCTTCCAGTCACTCGATCTTGCATGGACAT
|| |||  | | | |      | | | ||  | | |  | ||| ||| |||      ||| ||||| |||| | | ||||    |||||||| || || ||||||||||| ||||||||||| ||||| ||||||||||||||||| ||| | |||||||| |||||||| || || ||||||||||
gtttgtcactaataactattgaaataatcccatgctgatgtctcttttagaagt---aaatttaatattctat-ctttatc-tgcagCTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGAGCATATGATACAAGAAACATCTTTCAGTCACTTGACCTAGCATGGACAT

upper sequence: GRMZM2G094497_T02 (Zea mays), 3'ss of exon 13
lower sequence: GLYMA10G42940.3 (Glycine max), 3'ss of exon 14
-------gtctgttgcgagtgaaataaattc-gtaagttagttctttttcaga-----cccccaaaac----ttaatg------ttctgttccttattgc--acagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGAGCATATGACACACGGAACATCTTCCAGTCACTCGATCTTGCATGGACAT
        |   || | |    ||||| | |  ||  ||  |||||  |  ||     |||   ||      ||||||      || |   || | ||    |||||| ||  | || ||  | || ||||||||||| ||||||||  | || ||||| |||||||| || || || ||||||||||| |||||||||||||| |
gtctctaataactttctatcttaataagtactatattttgtttcttaatgtgaaattgcccttgaagtgatattaatggaactcttttccccccttttattaacagCTGTATCTGGAATTTTTGGAGAAGTTTGAGAGAAAGTTTGTTGCCCAGGGAGCTTATGACACCCGCAATATATTCCAGTCACTAGATCTTGCATGGACTT

upper sequence: GRMZM2G094497_T02 (Zea mays), 3'ss of exon 13
lower sequence: GLYMA18G48280.1 (Glycine max), 3'ss of exon 14
------------gtctgttgcgagtgaaataaattcgta-agttagttctttttcagacccccaaaacttaatgt-tctgttccttattgc--acagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGAGCATATGACACACGGAACATCTTCCAGTCACTCGATCTTGCATGGACAT-
             ||| ||| || |    |   |  ||  ||| || |  |  |   |        ||| | |   | | ||| ||||     |||||| || || || ||  | || ||||||||||||||||||||  | ||||||||||| || ||||| || |||||||||||||| |||||||||||||| | 
tctctactacttttctcttgggaattct-tgtttgagtgtagtgagattgtccttgaagtggtggtactaattaagtttattctttatgatcaacagcTGTATTTGGAATTTTTGGAGAAGTTTGAGAGGAAGTTTGTTGCCCAAGGAGCATACGATACACGCAATATCTTCCAGTCACTAGATCTTGCATGGACTTT

upper sequence: GRMZM2G094497_T02 (Zea mays), 3'ss of exon 13
lower sequence: GLYMA09G38110.1 (Glycine max), 3'ss of exon 14
-------------gtctgttgcgagtg---aaataaat-tcgtaagttagttctttttcagacccccaaaacttaatgttctgttccttattgcacagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGAGCATATGACACACGGAACATCTTCCAGTCACTCGATCTTGCATGGACAT
              ||| ||| || |       | | | | ||  ||| || |||     |      |  | ||||| || |  |  ||  |  |||||| || || || ||  | || ||||||||||||||||||||  | |||||||| || || ||||| || |||||||||||||| |||||||||||||| |
gtctctactacttttctcttgggaattcttgtttgagtatggtgtgtttgtccttgaagtggtggt-actaattaattttattctttttgatcaacagCTGTATTTGGAATTTTTGGAGAAGTTTGAGAGGAAGTTTGTTGCCCAAGGAGCTTACGATACACGCAATATCTTCCAGTCACTAGATCTTGCATGGACTT

upper sequence: GRMZM2G094497_T02 (Zea mays), 3'ss of exon 13
lower sequence: GLYMA20G24070.1 (Glycine max), 3'ss of exon 15
---------------gtctgttg-cgagtgaaataaattcgt-----aagttagttctttttcagacccccaa-aacttaatgttctgttccttattgc--acagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGAGCATATGACACACGGAACATCTTCCAGTCACTCGATCTTGCATGGACAT
                | | |||   |||   |||  ||  |     |||| |  | |   |   |     |  ||   ||    |  | || | ||    |||||| ||  | || ||  | || ||||||||||||||||||||  | || ||||| |||||||| || || || ||||||||||| |||||||||||||| |
gtctctaataactttctatcttgataagtactatattttgtttcttcaagtgaaatttcccttgaagtggtactaatggaactccccctccccttttattaacagCTGTATCTGGAATTTTTGGAGAAGTTTGAGAGGAAGTTTGTTGCCCAGGGAGCCTATGACACCCGCAATATATTCCAGTCACTTGATCTTGCATGGACTT

upper sequence: GRMZM2G094497_T02 (Zea mays), 3'ss of exon 13
lower sequence: AT4G38510.4 (Arabidopsis thaliana), 3'ss of exon 15
----gtctgttgcgagtgaaataaattcgtaagttagttctttttcagacccccaaaacttaatgttctgttccttattgcacagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGAGCATATGACACACGGAACATCTTCCAGTCACTCGATCTTGCATGGACAT
     |||  |     |   |  |     ||| |   |||  ||| |  || |  ||    | | || |  ||        |||||| ||  | |||||| | || ||||| ||||||||||||||| | || ||||| ||||| || || |||||||||||||||||||| || ||||||||  
gtctctcttcttttcttcttaccacagtctaaatgctttccgttttattcctcttaa---cactttttttatctgatgcaaacagCTATATCTTGAGTTCTTGGATAAGTTCGAGAGGAAGTTTGTGGCTCAGGGAGCTTATGATACCCGAAACATCTTCCAGTCACTCGACCTGGCATGGACTC

upper sequence: GRMZM2G094497_T02 (Zea mays), 3'ss of exon 13
lower sequence: AT1G20260.1 (Arabidopsis thaliana), 3'ss of exon 14
--------gtctgttgcgagtgaaat--aaattcgta---agttagttctttttcaga------cccccaaaacttaatgttctgttccttattgcacagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGAGCATATGACACACGGAACATCTTCCAGTCACTCGATCTTGCATGGACAT
         ||||     |   | ||     ||| ||   || || |   | | ||          | || |||    | || ||||   | ||    |||| || |||||||| || || || ||||| |||||||||||||  ||||| ||||| || ||| |||||||||||||||| || ||  | ||||||||| 
gtacctctctctgacttcaccaatattcgtgttcctatcaagatactgtatatgcaacaataattactcacaacaatttattgtgttgtgtgtt-tgtagCTGTATTTAGAGTTTCTGGATAAATTTGAAAGGAAGTTTGTGATGCAAGGCGCATACGATACAAGGAACATCTTCCAGTCGCTTGACTTGGCATGGACAC

upper sequence: GRMZM2G094497_T02 (Zea mays), 3'ss of exon 13
lower sequence: Vv18s0001g01020.t01 (Vitis vinifera), 3'ss of exon 14
-----------------------------------------gtctgttgcgagtgaaataaattcgtaagttagttctttt---tcagacccccaaa------acttaatgttctgttccttattgcacagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGAGCATATGACACACGGAACATCTTCCAGTCACTCGATCTTGCATGGACAT
                                         || ||||       |  |   |     | | | ||||  |   | | |  | ||||      || |   |||  |||   ||     ||||||||  | |||||||| ||||| || |||||||| |||||| | ||||| || ||||| || || ||||||||||||||||| ||| | || |||||||
gtatctctctttctctctcctcctttctgtagaaactatgtgtttgttttttcacatctttctctagcaataatttctcatagattaaaatcacaaagtattaacctggggttgggttgtctaaaattcagCTTTATCTGGAGTTCCTAGACAAATTCGAGAGGAAATTTGTGGCTCAAGGGGCTTATGATACCCGCAACATCTTCCAGTCACTAGATTTGGCGTGGACAT

upper sequence: GRMZM2G094497_T02 (Zea mays), 3'ss of exon 13
lower sequence: Vv03s0038g02760.t01 (Vitis vinifera), 3'ss of exon 14
--------gtctgttgcgagtga--aataaattcgtaagttagttctttttcagacccccaa--aacttaatgttctgttccttattgca--cagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGAGCATATGACACACGGAACATCTTCCAGTCACTCGATCTTGCATGGACAT
          || ||   | | |  | |  ||  | ||   |   || ||  |      |||  |||    ||| |    | | | || |  ||||| ||  | || ||||| ||||| || ||||| || |||||| | || ||||| |||||||| || |||||||||||||| || ||||| ||||||||  
gtacatctcactcttataaattatcatttcatctgaaatgaatccctattgtaagaaaacaactaacaggttgtccgacccttcactggaaacagCTATATCTGGAATTCCTAGACAAATTCGAGAGAAAATTTGTGGCTCAGGGAGCCTATGACACCCGCAACATCTTCCAGTCCCTTGATCTGGCATGGACGC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13198699|gb|BG354501.1|BG354501
EST:     AGGCCATGAAGGCTGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTG                         CTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
genomic: AGGCCATGAAGGCTGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTGgtctgttgcg ... tattgcacagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
EST: gi|32929245|gb|CF034057.1|CF034057
EST:     AGGCCATGAAGGCTGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTG                         CTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
genomic: AGGCCATGAAGGCTGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTGgtctgttgcg ... tattgcacagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
EST: gi|5915388|gb|AW053029.1|AW053029
EST:     AGGCCATGAAGGCTGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTG                         CTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTT
genomic: AGGCCATGAAGGCTGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTGgtctgttgcg ... tattgcacagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTT
EST: gi|31352565|gb|CD436922.1|CD436922
EST:     AGGCCATGAAGGCTGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTG                         CTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
genomic: AGGCCATGAAGGCTGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTGgtctgttgcg ... tattgcacagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
EST: gi|33097071|gb|CF057031.1|CF057031
EST:     AGGCCATGAAGGCTGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTA                         CTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
genomic: AGGCCATGAAGGCTGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTGgtctgttgcg ... tattgcacagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
EST: gi|67020207|gb|CO448956.1|CO448956
EST:     CACTCTCTTCTGAGGATCTG                         CTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
genomic: CACTCTCGTCTGAGGATCTGgtctgttgcg ... tattgcacagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
EST: gi|211461529|gb|FL062011.1|FL062011
EST:     AGGCCATGAAGGCTGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTG                         CTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
genomic: AGGCCATGAAGGCTGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTGgtctgttgcg ... tattgcacagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
EST: gi|32928465|gb|CF033277.1|CF033277
EST:     AGGCCATGAAGGCTGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTG                         CTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
genomic: AGGCCATGAAGGCTGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTGgtctgttgcg ... tattgcacagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
EST: gi|60353112|gb|DN220085.1|DN220085
EST:     AGGCCATGAAGGCTGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTG                         CTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
genomic: AGGCCATGAAGGCTGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTGgtctgttgcg ... tattgcacagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
EST: gi|6342732|gb|AW165556.1|AW165556
EST:     AGGCCATGAAGGCTGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTG                         CTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
genomic: AGGCCATGAAGGCTGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTGgtctgttgcg ... tattgcacagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
EST: gi|5901377|gb|AW042477.1|AW042477
EST:     AGGCCATGAAGGCTGTCGTTGGAGAGNAGGCACTCTCGTCTGAGGATCTG                         CTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
genomic: AGGCCATGAAGGCTGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTGgtctgttgcg ... tattgcacagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
EST: gi|31352616|gb|CD436973.1|CD436973
EST:     AGGCCATGAAGGCTGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTG                         CTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
genomic: AGGCCATGAAGGCTGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTGgtctgttgcg ... tattgcacagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
EST: gi|32928932|gb|CF033744.1|CF033744
EST:     AGGCCATGAAGGCTGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTG                         CTTTACTTAGAGTTCCTTGCCAAGTTTGAGAGGAAGTTTGTGACACAAGGA
genomic: AGGCCATGAAGGCTGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTGgtctgttgcg ... tattgcacagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
EST: gi|67022236|gb|CO450985.1|CO450985
EST:     AGGCCATGAAGGCTGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTG                         CTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
genomic: AGGCCATGAAGGCTGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTGgtctgttgcg ... tattgcacagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
EST: gi|37386947|gb|CF630666.1|CF630666
EST:     AGGCCATGAAGGCTGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTG                         CTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAG-TTGTGACACAAGGA
genomic: AGGCCATGAAGGCTGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTGgtctgttgcg ... tattgcacagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
EST: gi|211474169|gb|FL062077.1|FL062077
EST:     AGGCCATGAAGGCTGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTG                         CTTTACTTAGAGTTCCTTGACAAGTTTGAGAAGAAGTTTGTGACACAAGGA
genomic: AGGCCATGAAGGCTGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTGgtctgttgcg ... tattgcacagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
EST: gi|67040204|gb|CO466459.1|CO466459
EST:     AGGCCATGAANGCTGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTG                         CTTTACTTAGAGTTCCTTGACAAGTTTGAGAAGAAGTTTGTGACACNAGGA
genomic: AGGCCATGAAGGCTGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTGgtctgttgcg ... tattgcacagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
EST: gi|4621630|gb|AI612463.1|AI612463
EST:     AGGCCATGAAGGCTGTCGTTGGAAAGGAGGCACTCTCGTCTGAGGATATG                         CTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
genomic: AGGCCATGAAGGCTGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTGgtctgttgcg ... tattgcacagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
EST: gi|31352899|gb|CD437256.1|CD437256
EST:     AGGCCATGAAGGCTGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTG                         CTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
genomic: AGGCCATGAAGGCTGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTGgtctgttgcg ... tattgcacagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
EST: gi|32929097|gb|CF033909.1|CF033909
EST:     AGGCCATGAAGGCTGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTG                         CTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
genomic: AGGCCATGAAGGCTGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTGgtctgttgcg ... tattgcacagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
EST: gi|5804536|gb|AI979506.1|AI979506
EST:     AGGCCATGAAGGCTGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTG                         CTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
genomic: AGGCCATGAAGGCTGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTGgtctgttgcg ... tattgcacagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
EST: gi|32944174|gb|CF048993.1|CF048993
EST:     AGGCCATGAAGGCTGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTG                         CTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGCTTGTGACACAAGGA
genomic: AGGCCATGAAGGCTGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTGgtctgttgcg ... tattgcacagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
EST: gi|24765944|gb|CA401102.1|CA401102
EST:     GGCCCATGAAGGCTGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTG                         CTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
genomic: GG-CCATGAAGGCTGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTGgtctgttgcg ... tattgcacagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
EST: gi|60353085|gb|DN220058.1|DN220058
EST:     AGGCCATGAAGGCTGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTG                         CTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
genomic: AGGCCATGAAGGCTGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTGgtctgttgcg ... tattgcacagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
EST: gi|60358048|gb|DN225021.1|DN225021
EST:     AGGCCATGAAGGCTGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTG                         CTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
genomic: AGGCCATGAAGGCTGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTGgtctgttgcg ... tattgcacagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
EST: gi|32838699|gb|CD978380.1|CD978380
EST:     AGGCCATGAAGGCTGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTG                         CTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
genomic: AGGCCATGAAGGCTGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTGgtctgttgcg ... tattgcacagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
EST: gi|60345561|gb|DN212534.1|DN212534
EST:     AGGCCATGAAGGCTGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTG                         CTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
genomic: AGGCCATGAAGGCTGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTGgtctgttgcg ... tattgcacagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
EST: gi|6056572|gb|AW090977.1|AW090977
EST:     AGGCCATGAAGGCTGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTG                         CTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
genomic: AGGCCATGAAGGCTGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTGgtctgttgcg ... tattgcacagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
EST: gi|12968153|gb|BG265100.1|BG265100
EST:     AGGCCATGAAGGCTGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTG                         CTTTACTTAGAGTTCCCTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
genomic: AGGCCATGAAGGCTGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTGgtctgttgcg ... tattgcacagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
EST: gi|33092363|gb|CF052357.1|CF052357
EST:     AGGCCATGAAGGCTGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTG                         CTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
genomic: AGGCCATGAAGGCTGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTGgtctgttgcg ... tattgcacagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
EST: gi|78026344|gb|DV494731.1|DV494731
EST:     AGGCCATGAAGGCTGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTG                         CTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
genomic: AGGCCATGAAGGCTGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTGgtctgttgcg ... tattgcacagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
EST: gi|32928990|gb|CF033802.1|CF033802
EST:     AGGCCATGAAGGCTGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTG                         CTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
genomic: AGGCCATGAAGGCTGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTGgtctgttgcg ... tattgcacagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
EST: gi|32944913|gb|CF049732.1|CF049732
EST:     AGGCCATGAAGGCTGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTG                         CTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGCTTGTGACACAAGGA
genomic: AGGCCATGAAGGCTGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTGgtctgttgcg ... tattgcacagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
EST: gi|31352900|gb|CD437257.1|CD437257
EST:     AGGCCATGAAGGCTGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTG                         CTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
genomic: AGGCCATGAAGGCTGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTGgtctgttgcg ... tattgcacagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
EST: gi|31351441|gb|CD435798.1|CD435798
EST:     AGGCCATGAAGGCTGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTG                         CTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
genomic: AGGCCATGAAGGCTGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTGgtctgttgcg ... tattgcacagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
EST: gi|32856918|gb|CD996599.1|CD996599
EST:     AGGCCATGAAGGCTGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTG                         CTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
genomic: AGGCCATGAAGGCTGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTGgtctgttgcg ... tattgcacagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
EST: gi|32928322|gb|CF033134.1|CF033134
EST:     AGGCCATGAAGGCTGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTG                         CTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
genomic: AGGCCATGAAGGCTGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTGgtctgttgcg ... tattgcacagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
EST: gi|211466584|gb|FL062035.1|FL062035
EST:     AGGCCATGAAGGCTGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTG                         CTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
genomic: AGGCCATGAAGGCTGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTGgtctgttgcg ... tattgcacagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
EST: gi|5871234|gb|AW017705.1|AW017705
EST:     AGGCCATGAAGGCTGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTG                         CTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
genomic: AGGCCATGAAGGCTGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTGgtctgttgcg ... tattgcacagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
EST: gi|6012515|gb|AW061952.1|AW061952
EST:     AGGCCCTGAAGGCTGTCGTTGGAGAGGAGGCNCTCTCGTTTGAGGATCTG                         CTTTACTTAGAGTTCCTTGCCAAGTTTGAGAGGAAGTTTGTGACCCAAGGA
genomic: AGGCCATGAAGGCTGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTGgtctgttgcg ... tattgcacagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
EST: gi|60357117|gb|DN224090.1|DN224090
EST:     AGGCCATGAAGGCTGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTG                         CTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
genomic: AGGCCATGAAGGCTGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTGgtctgttgcg ... tattgcacagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
EST: gi|24764051|gb|CA399220.1|CA399220
EST:     AGGCCATGAAGGCTGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTG                         CTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
genomic: AGGCCATGAAGGCTGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTGgtctgttgcg ... tattgcacagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
EST: gi|12968141|gb|BG265088.1|BG265088
EST:     AGGCCATGAAGGCTGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTG                         CTTTACTTAGAGTTCCCTGACAAGTTTGAGAGGAAGTTTGTGACCCAAGGA
genomic: AGGCCATGAAGGCTGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTGgtctgttgcg ... tattgcacagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
EST: gi|24934300|gb|CA452518.1|CA452518
EST:     AGGCCATGAAGGCTGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTG                         CTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
genomic: AGGCCATGAAGGCTGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTGgtctgttgcg ... tattgcacagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
EST: gi|33101328|gb|CF061288.1|CF061288
EST:     AGGCCATGAAGGCTGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTG                         CTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
genomic: AGGCCATGAAGGCTGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTGgtctgttgcg ... tattgcacagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
EST: gi|60349999|gb|DN216972.1|DN216972
EST:     AGGCCATGAAGGCTGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTG                         CTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
genomic: AGGCCATGAAGGCTGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTGgtctgttgcg ... tattgcacagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
EST: gi|13198402|gb|BG354303.1|BG354303
EST:     AGGCCATGAAGGCTGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTG                         CTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
genomic: AGGCCATGAAGGCTGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTGgtctgttgcg ... tattgcacagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
EST: gi|213171194|gb|FM184433.1|FM184433
EST:     AGGCCATGAAGGCTGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTG                         CTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
genomic: AGGCCATGAAGGCTGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTGgtctgttgcg ... tattgcacagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
EST: gi|7844600|gb|AW787822.1|AW787822
EST:     AGGCCATGAAGGCTGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTG                         CTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACCCAAGGA
genomic: AGGCCATGAAGGCTGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTGgtctgttgcg ... tattgcacagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
EST: gi|211474172|gb|FL062080.1|FL062080
EST:     AGGCCATGAAGGCTGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTG                         CTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
genomic: AGGCCATGAAGGCTGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTGgtctgttgcg ... tattgcacagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
EST: gi|13490457|gb|BG517221.1|BG517221
EST:     GAGAGGAGGCACTCTCGTCTGAGGATCTG                         CTTTACTTAGAGTTGCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGG
genomic: GAGAGGAGGCACTCTCGTCTGAGGATCTGgtctgttgcg ... tattgcacagCTTTACTTAGAGTT-CCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGG
EST: gi|60344123|gb|DN211096.1|DN211096
EST:     AGGCCATGAAGGCTGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTG                         CTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
genomic: AGGCCATGAAGGCTGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTGgtctgttgcg ... tattgcacagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
EST: gi|33100800|gb|CF060760.1|CF060760
EST:     AGGCCATGAAGGCTGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTG                         CTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
genomic: AGGCCATGAAGGCTGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTGgtctgttgcg ... tattgcacagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
EST: gi|12968122|gb|BG265069.1|BG265069
EST:     AGGCCATGAAGGCTGTCGTTGGAAAGGAGGCACTCTCGTCTGAGGATCTG                         CTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACCCAAGGA
genomic: AGGCCATGAAGGCTGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTGgtctgttgcg ... tattgcacagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
EST: gi|60343460|gb|DN210433.1|DN210433
EST:     AGGCCATGAAGGCTGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTG                         CTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA
genomic: AGGCCATGAAGGCTGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTGgtctgttgcg ... tattgcacagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagttagttctttttcagacccccaaaacttaatgttctgttccttattgcacagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGAGCATATGACACACGGAACATCTTCCAGTCACTCGATCTTGCATGGACAT
                           acttaat  putative branch site (score: 4)
                                   ttctgttccttatt  CT-rich tract
                        aaaacttaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtctgttgcgagtgaaataaattcgtaagttagttctttttcagacccccaaaacttaatgttctgttccttattgcacagCTTTACTTAGAGTTCCTTGACAAGTTTGAGAGGAAGTTTGTGACACAAGGAGCATATGACACACGGAACATCTTCCAGTCACTCGATCTTGCATGGACAT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA