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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaacaaagtgggattgatttcgaattgattgatagtcagtgctggaacagttaagtcgatacctttgctgacttgctaattctctgatgtagCCTGCTTACCCAAGGACTGGCTGGCATCCAGGCCATTGATGTGCCTGGTGTTGAGAAC

Basic information

species Zea mays
transcript GRMZM2G092776_T06
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G092776_T03 (Zea mays), 3'ss of exon 15
lower sequence: LOC_Os03g02170.3 (Oryza sativa), 3'ss of exon 13
gtgaacaaagtgggattgatttc-gaattgattgatagtcagtgctggaacagttaagtcgatacctttgctgacttgc-taattctctgatgtagCCTGCTTACCCAAGGACTGGCTGGCATCCAGGCCATTGATGTGCCTGGTGTTGAGAAC
|| |||| | |     ||||||| ||  |  | || ||    |      ||  ||    | ||        ||||||   ||||  |||  || || ||||| || |||||  ||||||||||||||||||||||||| ||||||||||| || 
gtaaacagattta---tgatttcagagctcctagaaagctcatatc---accattccccc-atgtgagctatgacttaagtaatcttctcgtgcagtctgctaacacaagggttggctggcatccagGCCATTGATGTCCCTGGTGTTGAAAAT

upper sequence: GRMZM2G092776_T03 (Zea mays), 3'ss of exon 15
lower sequence: LOC_Os03g02170.1 (Oryza sativa), 3'ss of exon 13
gtgaacaaagtgggattgatttc-gaattgattgatagtcagtgctggaacagttaagtcgatacctttgctgacttgc-taattctctgatgtagCCTGCTTACCCAAGGACTGGCTGGCATCCAGGCCATTGATGTGCCTGGTGTTGAGAAC------------------------------------------
|| |||| | |     ||||||| ||  |  | || ||    |     | || |     | ||        ||||||   ||||  |||  || || ||||| || |||||  ||||||||||||||||||||||||| ||||||||||| ||                                           
gtaaacagattta---tgatttcagagctcctagaaagctcatatc--accattcc--cccatgtgagctatgacttaagtaatcttctcgtgcagTCTGCTAACACAAGGGTTGGCTGGCATCCAGGCCATTGATGTCCCTGGTGTTGAAAATGTAAGCATCTGGGGTGCCATTCTTGTGTTCTTACGTGATTTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110536646|gb|EE040761.1|EE040761
EST:     AATGTGTACTCGAGAGATGACTGGATTCTCGGTGTAACCTTCCGAGCAAG                         CCTGCTTACCCAAGGACTGGCTGGCATCCAGGCCATTGATGTGCCTGGTGT
genomic: AATGTGTACTCGAGAGATGACTGGATTCTCGGTGTAACCTTCCGAGCAAGgtgaacaaag ... tctgatgtagCCTGCTTACCCAAGGACTGGCTGGCATCCAGGCCATTGATGTGCCTGGTGT
EST: gi|149106666|gb|EE188560.2|EE188560
EST:     AATGTGTACTCGAGAGATGACTGGATTCTCGGTGTAACCTTCCGAGCAAG                         CCTGCTTACCCAAGGACTGGCTGGCATCCAGGCCATTGATGTGCCTGGTGT
genomic: AATGTGTACTCGAGAGATGACTGGATTCTCGGTGTAACCTTCCGAGCAAGgtgaacaaag ... tctgatgtagCCTGCTTACCCAAGGACTGGCTGGCATCCAGGCCATTGATGTGCCTGGTGT
EST: gi|89252188|gb|DY623974.1|DY623974
EST:     AATGTGTACTCGAGAGATGACTGGATTCTCGGTGTAACCTTCCGAGCAAG                         CCTGCTTACCCAAGGACTGGCTGGCATCCAGGCCATTGATGTGCCTGGTGT
genomic: AATGTGTACTCGAGAGATGACTGGATTCTCGGTGTAACCTTCCGAGCAAGgtgaacaaag ... tctgatgtagCCTGCTTACCCAAGGACTGGCTGGCATCCAGGCCATTGATGTGCCTGGTGT
EST: gi|74233198|gb|DT641112.1|DT641112
EST:     AATGTGTACTCGAGAGATGACTGGATTCTCGGTGTAACCTTCCGAGCAAG                         CCTGCTTACCCAAGGACTGGCTGGCATCCAGGCCATTGATGTACCTGGTGT
genomic: AATGTGTACTCGAGAGATGACTGGATTCTCGGTGTAACCTTCCGAGCAAGgtgaacaaag ... tctgatgtagCCTGCTTACCCAAGGACTGGCTGGCATCCAGGCCATTGATGTGCCTGGTGT
EST: gi|148966542|gb|EE017566.2|EE017566
EST:     AATGTGTACTCGAGAGATGACTGGATTCTCGGTGTAACCTTCCGAGCAAG                         CCTGCTTACCCAAGGACTGGGTGGCATTCAGGCCATTGATGTGCCTGGTGT
genomic: AATGTGTACTCGAGAGATGACTGGATTCTCGGTGTAACCTTCCGAGCAAGgtgaacaaag ... tctgatgtagCCTGCTTACCCAAGGACTGGCTGGCATCCAGGCCATTGATGTGCCTGGTGT
EST: gi|110960194|gb|EE180246.1|EE180246
EST:     AATGTGTACTCGAGAGATGACTGGATTCTCGGTGTAACCTTCCGAGCAAG                         CCTGCTTACCCAAGGACTGGCTGGCATCCAGGCCATTGATGTGCCTGGTGT
genomic: AATGTGTACTCGAGAGATGACTGGATTCTCGGTGTAACCTTCCGAGCAAGgtgaacaaag ... tctgatgtagCCTGCTTACCCAAGGACTGGCTGGCATCCAGGCCATTGATGTGCCTGGTGT
EST: gi|211299421|gb|FL314585.1|FL314585
EST:     AATGTGTACTCGAGAGATGACTGGATTCTCGGTGTAACCTTCCGAGCAAG                         CCTGCTTACCCAAGGACTGGCTGGCATCCAGGCCATTGATGTACCTGGTGT
genomic: AATGTGTACTCGAGAGATGACTGGATTCTCGGTGTAACCTTCCGAGCAAGgtgaacaaag ... tctgatgtagCCTGCTTACCCAAGGACTGGCTGGCATCCAGGCCATTGATGTGCCTGGTGT
EST: gi|91877535|gb|EB407492.1|EB407492
EST:     AATGTGTACTCGAGAGATGACTGGATTCTCGGTGTAACCTTCCGAGCAAG                         CCTGCTTACCCAAGGACTGGCTGGCATCCAGGCCATTGATGTGCCTGGTGT
genomic: AATGTGTACTCGAGAGATGACTGGATTCTCGGTGTAACCTTCCGAGCAAGgtgaacaaag ... tctgatgtagCCTGCTTACCCAAGGACTGGCTGGCATCCAGGCCATTGATGTGCCTGGTGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtgctggaacagttaagtcgatacctttgctgacttgctaattctctgatgtagCCTGCTTACCCAAGGACTGGCTGGCATCCAGGCCATTGATGTGCCTGGTGTTGAGAAC
                                          ttctct  CT-rich tract
                                       taattct  TA-rich tract