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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaacaaagtgggattgatttcgaattgattgatagtcagtgctggaacagttaagtcgatacctttgctgacttgctaattctctgatgtagCCTGCTTACCCAAGGACTGGCTGGCATCCAGGCCATTGATGTGCCTGGTGTTGAGAAC

Basic information

species Zea mays
transcript GRMZM2G092776_T02
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G092776_T03 (Zea mays), 3'ss of exon 15
lower sequence: LOC_Os03g02170.3 (Oryza sativa), 3'ss of exon 13
gtgaacaaagtgggattgatttc-gaattgattgatagtcagtgctggaacagttaagtcgatacctttgctgacttgc-taattctctgatgtagCCTGCTTACCCAAGGACTGGCTGGCATCCAGGCCATTGATGTGCCTGGTGTTGAGAAC
|| |||| | |     ||||||| ||  |  | || ||    |      ||  ||    | ||        ||||||   ||||  |||  || || ||||| || |||||  ||||||||||||||||||||||||| ||||||||||| || 
gtaaacagattta---tgatttcagagctcctagaaagctcatatc---accattccccc-atgtgagctatgacttaagtaatcttctcgtgcagtctgctaacacaagggttggctggcatccagGCCATTGATGTCCCTGGTGTTGAAAAT

upper sequence: GRMZM2G092776_T03 (Zea mays), 3'ss of exon 15
lower sequence: LOC_Os03g02170.1 (Oryza sativa), 3'ss of exon 13
gtgaacaaagtgggattgatttc-gaattgattgatagtcagtgctggaacagttaagtcgatacctttgctgacttgc-taattctctgatgtagCCTGCTTACCCAAGGACTGGCTGGCATCCAGGCCATTGATGTGCCTGGTGTTGAGAAC------------------------------------------
|| |||| | |     ||||||| ||  |  | || ||    |     | || |     | ||        ||||||   ||||  |||  || || ||||| || |||||  ||||||||||||||||||||||||| ||||||||||| ||                                           
gtaaacagattta---tgatttcagagctcctagaaagctcatatc--accattcc--cccatgtgagctatgacttaagtaatcttctcgtgcagTCTGCTAACACAAGGGTTGGCTGGCATCCAGGCCATTGATGTCCCTGGTGTTGAAAATGTAAGCATCTGGGGTGCCATTCTTGTGTTCTTACGTGATTTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6865375|gb|AW360725.1|AW360725
EST:     AATGTGTACTCGAGAGATGACTGGATTCTCGGTGCAACCTTCCGAGCAAG                         CCTGCTTACCCAAGGACTGGCTGGCATCCAGGCCATTGATGTGCCTGGTGT
genomic: AATGTGTACTCGAGAGATGACTGGATTCTCGGTGTAACCTTCCGAGCAAGgtgaacaaag ... tctgatgtagCCTGCTTACCCAAGGACTGGCTGGCATCCAGGCCATTGATGTGCCTGGTGT
EST: gi|6538838|gb|AW224977.1|AW224977
EST:     AATGTGTACTCGAGAGATGACTGGATTCTCGGTGTAACCTTCCGAGCAAG                         CCTGCTTACCCAAGGACTGGCTGGCATCCAGGCCATTGATGTGCCTGGTGT
genomic: AATGTGTACTCGAGAGATGACTGGATTCTCGGTGTAACCTTCCGAGCAAGgtgaacaaag ... tctgatgtagCCTGCTTACCCAAGGACTGGCTGGCATCCAGGCCATTGATGTGCCTGGTGT
EST: gi|78120794|gb|DV539178.1|DV539178
EST:     AATGTGTACTCGAGAGATGACTGGATTCTCGGTGTAACCTTCCGAGCAAG                         CCTGCTTACCCAAGGACTGGCTGGCATCCAGGCCATTGATGTGCCTGGTGT
genomic: AATGTGTACTCGAGAGATGACTGGATTCTCGGTGTAACCTTCCGAGCAAGgtgaacaaag ... tctgatgtagCCTGCTTACCCAAGGACTGGCTGGCATCCAGGCCATTGATGTGCCTGGTGT
EST: gi|6865071|gb|AW360421.1|AW360421
EST:     AATGTGTACTCGAGAGATGACTGGATTCTCGGTGTAACCTTCCGAGCAAG                         CCTGCTTACCCAAGGACTGGCTGGCATCCAGGCCATTGATGTGCCTGGTGT
genomic: AATGTGTACTCGAGAGATGACTGGATTCTCGGTGTAACCTTCCGAGCAAGgtgaacaaag ... tctgatgtagCCTGCTTACCCAAGGACTGGCTGGCATCCAGGCCATTGATGTGCCTGGTGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtgctggaacagttaagtcgatacctttgctgacttgctaattctctgatgtagCCTGCTTACCCAAGGACTGGCTGGCATCCAGGCCATTGATGTGCCTGGTGTTGAGAAC
                                          ttctct  CT-rich tract
                                       taattct  TA-rich tract