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...aagctccctgatttgggatttgctctaaattaactcacctgaaaatattggttgggctcaatactaaaagggtgaaaaaaatctcttctgaacattgcagGCTCCTAGTTCAGTTTTGGTGCAGCTACAGCACACTGCCGCTGAATGTGATTATTTCTCAG
species | Zea mays |
transcript | GRMZM2G089259_T01 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: ACATGTTTCATGAAGCACTACTACATGGTTGCCATTCGGTTGATTTCTGG GCTCCTAGTTCAGTTTTGGTGCAGCTACAGCACACTGCCGCTGAATGTGATEST: gi|60338197|gb|DN205170.1|DN205170
genomic: ACATGTTTCATGAAGCACTACTACATGGTTGCCATTCGGTTGATTTCTGGgtaagaattt ... aacattgcagGCTCCTAGTTCAGTTTTGGTGCAGCTACAGCACACTGCCGCTGAATGTGAT
EST: ACATGTTTCATGAAGCACTACTACATGGTTGCCATTCGGTTGATTTCTGG GCTCCTAGTTCAGTTTTGGTGCAGCTACAGCACACTGCCGCTGAATGTGATEST: gi|76012906|gb|DT940076.1|DT940076
genomic: ACATGTTTCATGAAGCACTACTACATGGTTGCCATTCGGTTGATTTCTGGgtaagaattt ... aacattgcagGCTCCTAGTTCAGTTTTGGTGCAGCTACAGCACACTGCCGCTGAATGTGAT
EST: ACATGTTTCATGAAGCACTACTACATGGTTGCCATTCGGTTGATTTCTGG GCTCCTAGTTCAGTTTTGGTGCAGCTACAGCACACTGCCGCTGAATGTGATEST: gi|50336815|gb|CO531941.1|CO531941
genomic: ACATGTTTCATGAAGCACTACTACATGGTTGCCATTCGGTTGATTTCTGGgtaagaattt ... aacattgcagGCTCCTAGTTCAGTTTTGGTGCAGCTACAGCACACTGCCGCTGAATGTGAT
EST: ACATGTTTCATGAAGCACTACTACATGGTTGCCATTCGGTTGATTTCTGG GCTCCTAGTTCAGTTTTGGTGCAGCTACAGCACACTGCCGCTGAATGTGATEST: gi|28987033|gb|CB351431.1|CB351431
genomic: ACATGTTTCATGAAGCACTACTACATGGTTGCCATTCGGTTGATTTCTGGgtaagaattt ... aacattgcagGCTCCTAGTTCAGTTTTGGTGCAGCTACAGCACACTGCCGCTGAATGTGAT
EST: ATGTTTCATGAAGCACTACTACATGGTTGCCATTCGGTTGATTTCTGG GCTCCTAGTTCAGTTTTGGTGCAGCTACAGCACACTGCCGCTGAATGTGATEST: gi|148994787|gb|EE034232.2|EE034232
genomic: ATGTTTCATGAAGCACTACTACATGGTTGCCATTCGGTTGATTTCTGGgtaagaattt ... aacattgcagGCTCCTAGTTCAGTTTTGGTGCAGCTACAGCACACTGCCGCTGAATGTGAT
EST: ACATGTTTCATGAAGCACTACTACATGGTTGCCATTCGGTTGATTTCTGG GCTCCTAGTTCAGTTTTGGTGCAGCTACAGCACACTGCCGCTGAATGTGATEST: gi|60356662|gb|DN223635.1|DN223635
genomic: ACATGTTTCATGAAGCACTACTACATGGTTGCCATTCGGTTGATTTCTGGgtaagaattt ... aacattgcagGCTCCTAGTTCAGTTTTGGTGCAGCTACAGCACACTGCCGCTGAATGTGAT
EST: ACATGTTTCATGAAGCACTACTACATGGTTGCCATTCGGTTGATTTCTGG GCTCCTAGTTCAGTTEST: gi|71329463|gb|DR801452.1|DR801452
genomic: ACATGTTTCATGAAGCACTACTACATGGTTGCCATTCGGTTGATTTCTGGgtaagaattt ... aacattgcagGCTCCTAGTTCAGTT
EST: ACATGTTTCATGAAGCACTACTACATGGTTGCCATTCGGTTGATTTCTGG GCTCCTAGTTCAGTTTTGGTGCAGCTACAGCACACTGCCGCTGAATGTGATEST: gi|29129794|gb|CB380498.1|CB380498
genomic: ACATGTTTCATGAAGCACTACTACATGGTTGCCATTCGGTTGATTTCTGGgtaagaattt ... aacattgcagGCTCCTAGTTCAGTTTTGGTGCAGCTACAGCACACTGCCGCTGAATGTGAT
EST: ACATGTTTCATGAAGCACTACTACATGGTTGCCATTCGGTTGATTTCTGG GCTCCTAGTTCAGTTTTGGTGCAGCTACAGCACACTGCCGCTGAATGTGATEST: gi|71321199|gb|DR797301.1|DR797301
genomic: ACATGTTTCATGAAGCACTACTACATGGTTGCCATTCGGTTGATTTCTGGgtaagaattt ... aacattgcagGCTCCTAGTTCAGTTTTGGTGCAGCTACAGCACACTGCCGCTGAATGTGAT
EST: ACATGTTTCATGAAGCACTACTACATGGTTGCCATTCGGTTGATTTCTGG GCTCCTAGTTCAGTTTTGGTGCAGCTACAGCACACTGCCGCTGAATGTGATEST: gi|50337270|gb|CO532396.1|CO532396
genomic: ACATGTTTCATGAAGCACTACTACATGGTTGCCATTCGGTTGATTTCTGGgtaagaattt ... aacattgcagGCTCCTAGTTCAGTTTTGGTGCAGCTACAGCACACTGCCGCTGAATGTGAT
EST: ACATGTTTCATGAAGCACTACTACATGGTTGCCATTCGGTTGATTTCTGG GCTCCTAGTTCAGTTTTGGTGCAGCTACAGCACACTGCCGCTGAATGTGAT
genomic: ACATGTTTCATGAAGCACTACTACATGGTTGCCATTCGGTTGATTTCTGGgtaagaattt ... aacattgcagGCTCCTAGTTCAGTTTTGGTGCAGCTACAGCACACTGCCGCTGAATGTGAT
tattggttgggctcaatactaaaagggtgaaaaaaatctcttctgaacattgcagGCTCCTAGTTCAGTTTTGGTGCAGCTACAGCACACTGCCGCTGAATGTGATTATTTCTCAG
tactaaa putative branch site (score: 49)
aatactaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagctccctgatttgggatttgctctaaattaactcacctgaaaatattggttgggctcaatactaaaagggtgaaaaaaatctcttctgaacattgcagGCTCCTAGTTCAGTTTTGGTGCAGCTACAGCACACTGCCGCTGAATGTGATTATTTCTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - tgatttg
- - - - - - - - - - - - - - - - - -cacctga
- - - - - - - - - - - - - - - - - - - - - - - -ttggttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaa