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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcttttctgaacttatattttttgccaaatatgtgaagtgattctgactatgttaaagacatctaccatcaatagCTATTAGCTCGAGATGGGGAACAAACTGAGAAGGACAAATGGATCGAGCTTGTTCAGGAAATCGCATGCAGTTCCTCAGTAAAACGACCAAAAGAT

Basic information

species Zea mays
transcript GRMZM2G086093_T02
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G086093_T03 (Zea mays), 3'ss of exon 11
lower sequence: LOC_Os03g05330.1 (Oryza sativa), 3'ss of exon 19
gtgcttttctgaacttatattttttgccaaatatgtgaagtga--ttctgactatgttaaagacatctaccatcaatagCTATTAGCTCGAGATGGGGAACAAACTGAGAAGGACAAATGGATCGAGCTTGTTCAGGAAATCGCATGCAGTTCCTCAGTAAAACGACCAAAAGAT
||||||| || ||  | ||||  |||||||| || ||||   |  || ||| | ||| |||  | |   |  || |||| ||||||| || ||||| ||||||||||||||||| || ||||| || |||||||||||  | ||||||||||||||||||||  | || ||||| 
gtgctttgcttaatgtctattccttgccaaacatctgaaacaactttttgattgtgt-aaaatccttgcctctccatagATATTAGCCCGTGATGGCGAACAAACTGAGAAGGAGAAGTGGATTGATCTTGTTCAGGAGGTTGCATGCAGTTCCTCAGTAAAGAGGCCCAAAGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31354548|gb|CD438905.1|CD438905
EST:     TTGCATTTCAGTCATTTTGCCCTTTTGATGGTGATGTAGAAATGGGAAAG                         CTATTAGCTCGAGATGGGGAACAAACTGAGAAGGACAAATGGTTCCAGCTT
genomic: TTGCATTTCAGTCATTTTGCGAATGTGTTGGTGATGTAGAAATGGGAAAGgtgcttttct ... ccatcaatagCTATTAGCTCGAGATGGGGAACAAACTGAGAAGGACAAATGGATCGAGCTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgccaaatatgtgaagtgattctgactatgttaaagacatctaccatcaatagCTATTAGCTCGAGATGGGGAACAAACTGAGAAGGACAAATGGATCGAGCTTGTTCAGGAAATCGCATGCAGTTCCTCAGTAAAACGACCAAAAGAT
                     ttctgac  putative branch site (score: 2)
                            tatgttaaa  TA-rich tract