1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtaagatagcttcagctaaacttcactgttgaacttttcattcaactcatatttcttataagtagatgagctattattgacttgtttcttacaatatgacagTTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGTTTATAAGGAGTGGCGCTTTTGGCAGCTATGACTATGAACCTCTCTTGGATTCCCTTGAAGGGA
species | Zea mays |
transcript | GRMZM2G085577_T01 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: CCAAAGCCGATGAAGTTGCTGGGCTGAGGAAGGATAGAGAAAATGGTCTG TTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGTTTATAAGGAGTGGCEST: gi|93283527|gb|EB675791.1|EB675791
genomic: CCAAAGCCGATGAAGTTGCTGGGCTGAGGAAGGATAGAGAAAATGGTCTGgtaagatagc ... aatatgacagTTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGTTTATAAGGAGTGGC
EST: CCAAAGCCGATGAAGTTGCTGGGCTGAGGAAGGATAGAGAAAATGGTCTG TTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGTTTATAAGGAGTGGCEST: gi|211014837|gb|FL417332.1|FL417332
genomic: CCAAAGCCGATGAAGTTGCTGGGCTGAGGAAGGATAGAGAAAATGGTCTGgtaagatagc ... aatatgacagTTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGTTTATAAGGAGTGGC
EST: CCAAAGCCGATGAAGTTGCTGGGCTGAGGAAGGATAGAGAAAATGGTCTG TTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGTTTATAAGGAGTGGCEST: gi|211209895|gb|FL408331.1|FL408331
genomic: CCAAAGCCGATGAAGTTGCTGGGCTGAGGAAGGATAGAGAAAATGGTCTGgtaagatagc ... aatatgacagTTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGTTTATAAGGAGTGGC
EST: CCAAAGCCGATGAAGTTGCTGGGCTGAGGAAGGATAGAGAAAATGGTCTG TTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGTTTATAAGGAGTGGCEST: gi|67041226|gb|CO467481.1|CO467481
genomic: CCAAAGCCGATGAAGTTGCTGGGCTGAGGAAGGATAGAGAAAATGGTCTGgtaagatagc ... aatatgacagTTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGTTTATAAGGAGTGGC
EST: CCAAAGCCGATGAAGTTGCTGGGCTGAGGAAGGATAGAGAAAATGGTCTG TTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCATTTTATAAGGAGTGGCEST: gi|71301961|gb|DR787056.1|DR787056
genomic: CCAAAGCCGATGAAGTTGCTGGGCTGAGGAAGGATAGAGAAAATGGTCTGgtaagatagc ... aatatgacagTTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGTTTATAAGGAGTGGC
EST: CCAAAGCCGATGAAGTTGCTGGGCTGAGGAAGGATAGAGAAAATGGTCTG TTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGTTTATAAGGAGTGGCEST: gi|60358978|gb|DN225951.1|DN225951
genomic: CCAAAGCCGATGAAGTTGCTGGGCTGAGGAAGGATAGAGAAAATGGTCTGgtaagatagc ... aatatgacagTTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGTTTATAAGGAGTGGC
EST: CCAAAGCCGATGAAGTTGCTGGGCTGAGGAAGGATAGAGAAAATGGTCTG TTCAAACCAGACCCACGTTTTGAAGAAGCCAATCATTTTATAAGGAGTGGCEST: gi|76924589|gb|DV170028.1|DV170028
genomic: CCAAAGCCGATGAAGTTGCTGGGCTGAGGAAGGATAGAGAAAATGGTCTGgtaagatagc ... aatatgacagTTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGTTTATAAGGAGTGGC
EST: CCAAAGCCGATGAAGTTGCTGGGCTGAGGAAGGATAGAGAAAATGGTCTG TTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGTTTATAAGGAGTGGCEST: gi|32855932|gb|CD995613.1|CD995613
genomic: CCAAAGCCGATGAAGTTGCTGGGCTGAGGAAGGATAGAGAAAATGGTCTGgtaagatagc ... aatatgacagTTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGTTTATAAGGAGTGGC
EST: CCAAAGCCGATGAAGTTGCTGGGCTGAGGAAGGACAGAGAAAATGGCCTG TTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGTTTATAAGGAGTGGCEST: gi|211355999|gb|FL410711.1|FL410711
genomic: CCAAAGCCGATGAAGTTGCTGGGCTGAGGAAGGATAGAGAAAATGGTCTGgtaagatagc ... aatatgacagTTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGTTTATAAGGAGTGGC
EST: CCAAAGCCGATGAAGTTGCTGGGCTGAGGAAGGATAGAGAAAATGGTCTG TTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGTTTATAAGGAGTGGCEST: gi|60354851|gb|DN221824.1|DN221824
genomic: CCAAAGCCGATGAAGTTGCTGGGCTGAGGAAGGATAGAGAAAATGGTCTGgtaagatagc ... aatatgacagTTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGTTTATAAGGAGTGGC
EST: CCAAAGCCGATGAAGTTGCTGGGCTGAGGAAGGATAGAGAAAATGGTCTG TTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGTTTATAAGGAGTGGCEST: gi|60354619|gb|DN221592.1|DN221592
genomic: CCAAAGCCGATGAAGTTGCTGGGCTGAGGAAGGATAGAGAAAATGGTCTGgtaagatagc ... aatatgacagTTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGTTTATAAGGAGTGGC
EST: CCAAAGCCGATGAAGTTGCTGGGCTGAGGAAGGATAGAGAAAATGGTCTG TTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGTTTATAAGGAGTGGCEST: gi|40335159|gb|CK369229.1|CK369229
genomic: CCAAAGCCGATGAAGTTGCTGGGCTGAGGAAGGATAGAGAAAATGGTCTGgtaagatagc ... aatatgacagTTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGTTTATAAGGAGTGGC
EST: CCAAAGCCGATGAAGTTGCTGGGCTGAGGAAGGACAGAGAAAATGGCCTG TTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGTTTATAAGGAGTGGCEST: gi|60347330|gb|DN214303.1|DN214303
genomic: CCAAAGCCGATGAAGTTGCTGGGCTGAGGAAGGATAGAGAAAATGGTCTGgtaagatagc ... aatatgacagTTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGTTTATAAGGAGTGGC
EST: CCAAAGCCGATGAAGTTGCTGGGCTGAGGAAGGATAGAGAAAATGGTCTG TTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGTTTATAAGGAGTGGCEST: gi|71301958|gb|DR787055.1|DR787055
genomic: CCAAAGCCGATGAAGTTGCTGGGCTGAGGAAGGATAGAGAAAATGGTCTGgtaagatagc ... aatatgacagTTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGTTTATAAGGAGTGGC
EST: CCAAAGCCGATGAAGTTGCTGGGCTGAGGAAGGATAGAGAAAATGGTCTG TTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGTTTATAAGGAGTGGCEST: gi|60401276|gb|DN234083.1|DN234083
genomic: CCAAAGCCGATGAAGTTGCTGGGCTGAGGAAGGATAGAGAAAATGGTCTGgtaagatagc ... aatatgacagTTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGTTTATAAGGAGTGGC
EST: CCAAAGCCGATGAAGTTGCTGGGCTGAGGAAGGATAGAGAAAATGGTCTG TTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGTTTATAAGGAGTGGCEST: gi|6636976|gb|AW261248.1|AW261248
genomic: CCAAAGCCGATGAAGTTGCTGGGCTGAGGAAGGATAGAGAAAATGGTCTGgtaagatagc ... aatatgacagTTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGTTTATAAGGAGTGGC
EST: CCAAAGCCGATGAAGTTGCTGGGCTGAGGAAGGATAGAGAAAATGGTCTG TTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGTTTATAAGGAGTGGCEST: gi|94472102|gb|EB701060.1|EB701060
genomic: CCAAAGCCGATGAAGTTGCTGGGCTGAGGAAGGATAGAGAAAATGGTCTGgtaagatagc ... aatatgacagTTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGTTTATAAGGAGTGGC
EST: CCAAAGCCGATGAAGTTGCTGGGCTGAGGAAGGATAGAGAAAATGGTCTG TTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGTTTATAAGGAGTGGCEST: gi|211204436|gb|FL394622.1|FL394622
genomic: CCAAAGCCGATGAAGTTGCTGGGCTGAGGAAGGATAGAGAAAATGGTCTGgtaagatagc ... aatatgacagTTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGTTTATAAGGAGTGGC
EST: CCAAAGCCGATGAAGTTGCTGGGCTGAGGAAGGATAGAGAAAATGGTCTG TTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGTTTATAAGGAGTGGCEST: gi|37380429|gb|CF627026.1|CF627026
genomic: CCAAAGCCGATGAAGTTGCTGGGCTGAGGAAGGATAGAGAAAATGGTCTGgtaagatagc ... aatatgacagTTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGTTTATAAGGAGTGGC
EST: TGGGCTGAGGAAGGACAGAGAAAATGGCCTG TTCAAACCAGACCCACG-TTTGAAAGAAGCCAAGCAGTTTATAAGGAGTGGEST: gi|60348694|gb|DN215667.1|DN215667
genomic: TGGGCTGAGGAAGGATAGAGAAAATGGTCTGgtaagatagc ... aatatgacagTTCAAACCAGACCCACGTTTTG-AAGAAGCCAAGCAGTTTATAAGGAGTGG
EST: CCAAAGCCGATGAAGTTGCTGGGCTGAGGAAGGATAGAGAAAATGGTCTG TTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGTTTATAAGGAGTGGCEST: gi|19770331|gb|BQ035052.1|BQ035052
genomic: CCAAAGCCGATGAAGTTGCTGGGCTGAGGAAGGATAGAGAAAATGGTCTGgtaagatagc ... aatatgacagTTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGTTTATAAGGAGTGGC
EST: CCAAAGCCGATGAAGTTGCTGGGCTGAGGAAGGATAGAGAAAATGGTCTG TTCAAACCAGACCCACG-TTTGAAGAAGCCAAGCAG-TTATAAGGAGTGGCEST: gi|71767179|gb|DR965116.1|DR965116
genomic: CCAAAGCCGATGAAGTTGCTGGGCTGAGGAAGGATAGAGAAAATGGTCTGgtaagatagc ... aatatgacagTTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGTTTATAAGGAGTGGC
EST: CCAAAGCCGATGAAGTTGCTGGGCTGAGGAAGGATAGAGAAAATGGTCTG TTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGTTTATAAGGAGTGGCEST: gi|211521628|gb|FL412959.1|FL412959
genomic: CCAAAGCCGATGAAGTTGCTGGGCTGAGGAAGGATAGAGAAAATGGTCTGgtaagatagc ... aatatgacagTTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGTTTATAAGGAGTGGC
EST: CCAAAGCCGATGAAGTTGCTGGGCTGAGGAAGGATAGAGAAAATGGTCTG TTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGTTTATAAGGAGTGGCEST: gi|60340741|gb|DN207714.1|DN207714
genomic: CCAAAGCCGATGAAGTTGCTGGGCTGAGGAAGGATAGAGAAAATGGTCTGgtaagatagc ... aatatgacagTTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGTTTATAAGGAGTGGC
EST: C-AAGCCGATGAAGTTGCTGNGGCTGAGGAAGGATAGAGAAAATGGTCTG TTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGTTTATAAGGAGTGGCEST: gi|89106551|gb|DY576768.1|DY576768
genomic: CAAAGCCGATGAAGTTGCTG-GGCTGAGGAAGGATAGAGAAAATGGTCTGgtaagatagc ... aatatgacagTTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGTTTATAAGGAGTGGC
EST: CCAAAGCCGATGAAGTTGCTGGGCTGAGGAAGGACAGAGAAAATGGCCTG TTCAAACCAGACCCACGTTTTGAAGAAGCCAAACAGTTTATAAGGAGTGGCEST: gi|19436465|gb|BM952875.1|BM952875
genomic: CCAAAGCCGATGAAGTTGCTGGGCTGAGGAAGGATAGAGAAAATGGTCTGgtaagatagc ... aatatgacagTTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGTTTATAAGGAGTGGC
EST: AGAGAAAATGGCCTG TTCAAACCAGACCCACGTTTTGAAGAAGCCAAACAGTTTATAAGGAGTGGC
genomic: AGAGAAAATGGTCTGgtaagatagc ... aatatgacagTTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGTTTATAAGGAGTGGC
catatttcttataagtagatgagctattattgacttgtttcttacaatatgacagTTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGTTTATAAGGAGTGGCGCTTTTGGCAGCTATGACTATGAACCTCTCTTGGATTCCCTTGAAGGGA
ttcttac putative branch site (score: 377)
ttcttataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagatagcttcagctaaacttcactgttgaacttttcattcaactcatatttcttataagtagatgagctattattgacttgtttcttacaatatgacagTTCAAACCAGACCCACGTTTTGAAGAAGCCAAGCAGTTTATAAGGAGTGGCGCTTTTGGCAGCTATGACTATGAACCTCTCTTGGATTCCCTTGAAGGGA
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