1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtatggtctctgcctctggctacgttctcgtggggagatttctgatcctgtgctgctcttttctattgacgcagAGCCTGGTAACCGCGGACTAGTGGTTCATCCACTCGGGAAGAGTGGAAAGAGGTTTGGATTGGATGTCCTGGAGCAAACTTGTGTCGGGACTTGGATTAC
species | Zea mays |
transcript | GRMZM2G082502_T01 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: GCCAAGCACATCGACCTGTGGCTGTCGCAATGCAGCAAACCATCAGTAGG AGCCTGGTAACCGCGGACTAGTGGTTCATCCACTCGGGAAGAGTGGAAAGAEST: gi|91055261|gb|EB165679.1|EB165679
genomic: GCCAAGCACATCGACCTGTGGCTGTCGCAATGCAGCAAACCATCAGTAGGgtatggtctc ... attgacgcagAGCCTGGTAACCGCGGACTAGTGGTTCATCCACTCGGGAAGAGTGGAAAGA
EST: GCCAAGCACATCGACCTGTGGCTGTCGCAATGCAGCAAACCATCAGTAGG AGCCTGGTAACCGCGGACTAGTGGTTCATCCACTCGGGAAGAGTGGAAAGAEST: gi|18180479|gb|BM381689.1|BM381689
genomic: GCCAAGCACATCGACCTGTGGCTGTCGCAATGCAGCAAACCATCAGTAGGgtatggtctc ... attgacgcagAGCCTGGTAACCGCGGACTAGTGGTTCATCCACTCGGGAAGAGTGGAAAGA
EST: GCCAAGCACATCGACCTGTGGCTGTCGCAATGCAGCAAACCATCAGTAGG AGCCTGGTAACCGCGGACTAGTGGTTCATCCACTCGGGAAGAGTGGAAAGAEST: gi|88750785|gb|DY534926.1|DY534926
genomic: GCCAAGCACATCGACCTGTGGCTGTCGCAATGCAGCAAACCATCAGTAGGgtatggtctc ... attgacgcagAGCCTGGTAACCGCGGACTAGTGGTTCATCCACTCGGGAAGAGTGGAAAGA
EST: GCCAAGCACATCGACCTGTGGCTGTCGCAATGCAGCAAACCATCAGTAGG AGCCTGGTAACCGCGGACTAGTGGTTCATCCACTCGGGAAGAGTGGAAAGAEST: gi|8367939|gb|BE050884.1|BE050884
genomic: GCCAAGCACATCGACCTGTGGCTGTCGCAATGCAGCAAACCATCAGTAGGgtatggtctc ... attgacgcagAGCCTGGTAACCGCGGACTAGTGGTTCATCCACTCGGGAAGAGTGGAAAGA
EST: GCCAAGCACATCGACCTGTGGCTGTCGCAATGCAGCAAACCATCAGTAGG AGCCTGGTAACCGCG
genomic: GCCAAGCACATCGACCTGTGGCTGTCGCAATGCAGCAAACCATCAGTAGGgtatggtctc ... attgacgcagAGCCTGGTAACCGCG
ctacgttctcgtggggagatttctgatcctgtgctgctcttttctattgacgcagAGCCTGGTAACCGCGGACTAGTGGTTCATCCACTCGGGAAGAGTGGAAAGAGGTTTGGATTGGATGTCCTGGAGCAAACTTGTGTCGGGACTTGGATTAC
tattgac putative branch site (score: 59)
ctgctcttttctatt CT-rich tract
ttttctatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatggtctctgcctctggctacgttctcgtggggagatttctgatcctgtgctgctcttttctattgacgcagAGCCTGGTAACCGCGGACTAGTGGTTCATCCACTCGGGAAGAGTGGAAAGAGGTTTGGATTGGATGTCCTGGAGCAAACTTGTGTCGGGACTTGGATTAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA