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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatataagttttcatatttttggaatgtgaatacattgtcagcaagtttctgtgagtgaagcttgtgtgagtttaactgtttgttctaaaagtacacctttttactgtctcacatgacatagGAGAGTTCAAGATTAATGTTGAGTGCAACCATGCTACTCTATCTGGACACAG

Basic information

species Zea mays
transcript GRMZM2G081682_T01
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G081682_T01 (Zea mays), 3'ss of exon 13
lower sequence: LOC_Os07g47290.3 (Oryza sativa), 3'ss of exon 13
---------------------------------------------------------gtaatataagttttcatatttttggaatgtgaatacattgtcagcaagtttctgtgagtgaagcttgtgtgagtttaactgtttgttctaaaagtac---acctttttactgtctcacatgacatagGAGAGTTCAAGATTAATGTTGAGTGCAACCATGCTACTCTATCTGGACACAG
                                                         | | |  | |  ||||| | ||   |   | | |   |||  | ||| ||| | | | ||  |  ||| ||   ||||| || | || | |||  |    |  |   | || | ||||   | | |||||| |||||||| |||||||| |||||||| ||||||||||||||||| ||
gtacatatgtagtttgttattgggtttacagtgatttcgaaagttgaactgttatttggatttcaggaattcatgtattaacaccattagtgttttg--aacaattttattt-actgctgtctgtctggagttaaccgtgtattgtgaaataatctaaagtacattctttttcaccatatacagGAGAATTCAAGATAAATGTTGAATGCAACCACGCTACTCTATCTGGACATAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211073602|gb|FL380705.1|FL380705
EST:     CTGGGATGTTGCGACTACGTTTGCTTTTCTACAGAAGTACGGTCTTACAG                         GAGAGTTCAAGATTAATGTTGAGTGCAACCATGCTACTCTATCTGGACACA
genomic: CTGGGATGTTGCGACTACGTTTGCTTTTCTACAGAAGTACGGTCTTACAGgtaatataag ... catgacatagGAGAGTTCAAGATTAATGTTGAGTGCAACCATGCTACTCTATCTGGACACA
EST: gi|31349785|gb|CD434142.1|CD434142
EST:     CTGGGATGTTGCGACTACGTTTGCTTTTCTACAGAAGTACGGTCTTACAG                         GAGAGTTCAAGATTAATGTTGAGTGCAACCATGCTACTCTATCTGGACACA
genomic: CTGGGATGTTGCGACTACGTTTGCTTTTCTACAGAAGTACGGTCTTACAGgtaatataag ... catgacatagGAGAGTTCAAGATTAATGTTGAGTGCAACCATGCTACTCTATCTGGACACA
EST: gi|6194746|gb|AW146850.1|AW146850
EST:     CTGGGATGTTGCGACTACGTTTGCTTTTCTACAGAAGTACGGTCTTACAG                         GAGAGTTCAAGATTAATGTTGAGTGCAACCATGCTACTCTATCTGGACACA
genomic: CTGGGATGTTGCGACTACGTTTGCTTTTCTACAGAAGTACGGTCTTACAGgtaatataag ... catgacatagGAGAGTTCAAGATTAATGTTGAGTGCAACCATGCTACTCTATCTGGACACA
EST: gi|5296207|gb|AI782887.1|AI782887
EST:     CTGGGATGTTGCGACTACGTTTGCTTTTCTACAGAAGTACGGTCTTACAG                         GAGAGTTCAAGATTAATGTTGAGTGCAACCATGCTACTCTATCTGGACACA
genomic: CTGGGATGTTGCGACTACGTTTGCTTTTCTACAGAAGTACGGTCTTACAGgtaatataag ... catgacatagGAGAGTTCAAGATTAATGTTGAGTGCAACCATGCTACTCTATCTGGACACA
EST: gi|33104022|gb|CF063982.1|CF063982
EST:     GTACGGTCTTACAG                         GAGAGTTCAAGATTAATGTTGAGTGCAACCATGCTACTCTATCTGGACACA
genomic: GTACGGTCTTACAGgtaatataag ... catgacatagGAGAGTTCAAGATTAATGTTGAGTGCAACCATGCTACTCTATCTGGACACA
EST: gi|74232803|gb|DT640717.1|DT640717
EST:     CTGGGATGTTGCGACTACGTTTGCTTTTCTACAGAAGTACGGTCTTACAG                         GAGAGTTCAAGATTAATGTTGAGTGCAACCATGCTACTCTATCTGGACACA
genomic: CTGGGATGTTGCGACTACGTTTGCTTTTCTACAGAAGTACGGTCTTACAGgtaatataag ... catgacatagGAGAGTTCAAGATTAATGTTGAGTGCAACCATGCTACTCTATCTGGACACA
EST: gi|5846747|gb|AI999830.1|AI999830
EST:     CTGGGATGTTGCGACTACGTTTGCTTTTCTACAGAAGTACGGTCTTACAG                         GAGAGTTCAAGATTAATGTTGAGTGCAACCATGCTACTCTATCTGGACACA
genomic: CTGGGATGTTGCGACTACGTTTGCTTTTCTACAGAAGTACGGTCTTACAGgtaatataag ... catgacatagGAGAGTTCAAGATTAATGTTGAGTGCAACCATGCTACTCTATCTGGACACA
EST: gi|211313620|gb|FL416741.1|FL416741
EST:     CTGGAATGTTGCGACTACGTTTGCTTTTCTACAGAAGTACGGTCTTACAG                         GAGAGTTCAAGATTAATGTTGAGTGCAACCATGCTACTCTATCTGGACACA
genomic: CTGGGATGTTGCGACTACGTTTGCTTTTCTACAGAAGTACGGTCTTACAGgtaatataag ... catgacatagGAGAGTTCAAGATTAATGTTGAGTGCAACCATGCTACTCTATCTGGACACA
EST: gi|31250143|gb|CD219167.1|CD219167
EST:     CTGGGATGTTGCGACTACGTTTGCTTTTCTACAGAAGTACGGTCCTACAG                         GAGAGTTCAAGATTAATGTTGAGTGCAACCATGCTACTCTATCTGGACACA
genomic: CTGGGATGTTGCGACTACGTTTGCTTTTCTACAGAAGTACGGTCTTACAGgtaatataag ... catgacatagGAGAGTTCAAGATTAATGTTGAGTGCAACCATGCTACTCTATCTGGACACA
EST: gi|211434578|gb|FL418942.1|FL418942
EST:     CTGGGATGTTGCGACTACGTTTGCTTTTCTACAGAAGTACGGTCTTACAG                         GAGAGTTCAAGATTAATGTTGAGTGCAACCATGCTACTCTATCTGGACACA
genomic: CTGGGATGTTGCGACTACGTTTGCTTTTCTACAGAAGTACGGTCTTACAGgtaatataag ... catgacatagGAGAGTTCAAGATTAATGTTGAGTGCAACCATGCTACTCTATCTGGACACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgagtttaactgtttgttctaaaagtacacctttttactgtctcacatgacatagGAGAGTTCAAGATTAATGTTGAGTGCAACCATGCTACTCTATCTGGACACAG
                ttctaaaa  TA-rich tract