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gtgacacattgcttcaattgcttgacaatttagttatccagtgtctgatacgaataccttaatcaaagctattgttgttactagttggcttctttctaacatgtgatatttaccacttcgatatcatcaatgaaaaaagattgtctgatctggttattggttcgtgcatcatagAATTTGACAGTCAAGGCTTTGGCTACGCCTGTAAGACAAAACCAGAGGCAAAGCCAGAGGAAACCGATTGAGAAAGCTAAGCAGAAGAAGATTCAAGCCC
species | Zea mays |
transcript | GRMZM2G081642_T01 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: TAGGAGCAGCCAGTGATGAATCATTCTCAGGCGATAATAATGATAAGCAG AATTTGACAGTCAAGGCTTTGGCTACGCCTGTAAGACAAAACCAGAGGCAAEST: gi|211442455|gb|FL443592.1|FL443592
genomic: TAGGAGCAGCCAGTGATGAATCATTCTCAGGCGATAATAATGATAAGCAGgtgacacatt ... tgcatcatagAATTTGACAGTCAAGGCTTTGGCTACGCCTGTAAGACAAAACCAGAGGCAA
EST: ATGAATCATTCTCAGGCGATAATAATGATAASCAG AATTTGMCAGTCAAGGCTTTGGCTACGCCTGTAAGACAAAACCAGAGGCAAEST: gi|32858949|gb|CD998630.1|CD998630
genomic: ATGAATCATTCTCAGGCGATAATAATGATAAGCAGgtgacacatt ... tgcatcatagAATTTGACAGTCAAGGCTTTGGCTACGCCTGTAAGACAAAACCAGAGGCAA
EST: TAGGAGCAGCCAGTGATGAATCATTCTCAGGCGATAATAATGATAAGCAG AATTTGACAGTCAAGGCTTTGGCTACGCCTGTAAGACAAAACCAGAGGCAAEST: gi|21480872|gb|BQ577555.1|BQ577555
genomic: TAGGAGCAGCCAGTGATGAATCATTCTCAGGCGATAATAATGATAAGCAGgtgacacatt ... tgcatcatagAATTTGACAGTCAAGGCTTTGGCTACGCCTGTAAGACAAAACCAGAGGCAA
EST: CTCAGGCGATAATAATGATAAGCAG AATTTGACAGTCAAGGCTTTGGCTACGCCTGTAAGACAAAACCAGAGGCAAEST: gi|21481154|gb|BQ577837.1|BQ577837
genomic: CTCAGGCGATAATAATGATAAGCAGgtgacacatt ... tgcatcatagAATTTGACAGTCAAGGCTTTGGCTACGCCTGTAAGACAAAACCAGAGGCAA
EST: TAGGAGCAGCCAGTGATGAATCATTCTCAGGCGATAATAATGATAAGCAG AATTTGACAGTCAAGGCTTTGGCTACGCCTGTAAGACAAAACCAGAGGCAAEST: gi|71757857|gb|DR955794.1|DR955794
genomic: TAGGAGCAGCCAGTGATGAATCATTCTCAGGCGATAATAATGATAAGCAGgtgacacatt ... tgcatcatagAATTTGACAGTCAAGGCTTTGGCTACGCCTGTAAGACAAAACCAGAGGCAA
EST: TAGGAGCAGCCAGTGATGAATCATTCTCAGGCGATAATAATGATAAGCAG AATTTGACAGTCAAGGCTTTGGCTACGCCTGTAAGACAAAACCAGAGGCAAEST: gi|5915152|gb|AW052793.1|AW052793
genomic: TAGGAGCAGCCAGTGATGAATCATTCTCAGGCGATAATAATGATAAGCAGgtgacacatt ... tgcatcatagAATTTGACAGTCAAGGCTTTGGCTACGCCTGTAAGACAAAACCAGAGGCAA
EST: TAGGAGCAGCCAGTGATGAATCATTCTCAGGCGATAATAATGATAAGCAG AATTTGACAG-CAAGGEST: gi|21480742|gb|BQ577425.1|BQ577425
genomic: TAGGAGCAGCCAGTGATGAATCATTCTCAGGCGATAATAATGATAAGCAGgtgacacatt ... tgcatcatagAATTTGACAGTCAAGG
EST: CTCAGGCGATAATAATGATAAGCAG AATTTGACAGTCAAGGCTTTGGCTACGCCTGTAAGACAAAACCAGAGGCAAEST: gi|21329781|gb|BQ485162.1|BQ485162
genomic: CTCAGGCGATAATAATGATAAGCAGgtgacacatt ... tgcatcatagAATTTGACAGTCAAGGCTTTGGCTACGCCTGTAAGACAAAACCAGAGGCAA
EST: TAGGAGCAGCCAGTGATGAATCATTCTCAGGCGATAATAATGATAAGCAG AATTTGACAGTCAAGGCTTTGGCTACGCCTGTAAGACAAAACCAGAGGCAAEST: gi|32870183|gb|CF009865.1|CF009865
genomic: TAGGAGCAGCCAGTGATGAATCATTCTCAGGCGATAATAATGATAAGCAGgtgacacatt ... tgcatcatagAATTTGACAGTCAAGGCTTTGGCTACGCCTGTAAGACAAAACCAGAGGCAA
EST: TAGGAGCAGCCAGTGATGAATCATTCTCAGGCGATAATAATGATAAGCAG AATTTGACAGTCAAGGCTTTGGCTACGCCTGTAAGACAAAACCAGAGGCAAEST: gi|21236632|gb|BQ442044.1|BQ442044
genomic: TAGGAGCAGCCAGTGATGAATCATTCTCAGGCGATAATAATGATAAGCAGgtgacacatt ... tgcatcatagAATTTGACAGTCAAGGCTTTGGCTACGCCTGTAAGACAAAACCAGAGGCAA
EST: TAGGAGCAGCCAGTGATGAATCATTCTCAGGCGATAATAATGATAAGCAG AATTTGACAGTCAAGGCTTTGGCTACGCCTGTAAGACAAAACCAGAGGCAAEST: gi|78125549|gb|DV543933.1|DV543933
genomic: TAGGAGCAGCCAGTGATGAATCATTCTCAGGCGATAATAATGATAAGCAGgtgacacatt ... tgcatcatagAATTTGACAGTCAAGGCTTTGGCTACGCCTGTAAGACAAAACCAGAGGCAA
EST: TAGGAGCAGCCAGTGATGAATCATTCTCAGGCGATAATAATGATAAGCAG AATTTGACAGTCAAGGCTTTGGCTACGCCTGTAAGACAAAACCAGAGGCAAEST: gi|17932105|gb|BM269065.1|BM269065
genomic: TAGGAGCAGCCAGTGATGAATCATTCTCAGGCGATAATAATGATAAGCAGgtgacacatt ... tgcatcatagAATTTGACAGTCAAGGCTTTGGCTACGCCTGTAAGACAAAACCAGAGGCAA
EST: AGCCAGTGATGAATCATTCTCAGGCGATAATAATGATAAGCAG AATTTGACAGTCAAGGCTTTGGCTACGCCTGTAAGACAAAACCAGAGGCAAEST: gi|5804604|gb|AI979574.1|AI979574
genomic: AGCCAGTGATGAATCATTCTCAGGCGATAATAATGATAAGCAGgtgacacatt ... tgcatcatagAATTTGACAGTCAAGGCTTTGGCTACGCCTGTAAGACAAAACCAGAGGCAA
EST: TAGGAGCAGCCAGTGATGAATCATTCTCAGGCGATAATAATGATAAGCAG AATTTGACAGTCAAGGCTTTGGCTACGCCTGTAAGACAAAACCAGAGGCAAEST: gi|21481331|gb|BQ578014.1|BQ578014
genomic: TAGGAGCAGCCAGTGATGAATCATTCTCAGGCGATAATAATGATAAGCAGgtgacacatt ... tgcatcatagAATTTGACAGTCAAGGCTTTGGCTACGCCTGTAAGACAAAACCAGAGGCAA
EST: CTCAGGCGATAATAATGATAAGCAG AATTTGACAGTCAAGGCTTTGGCTACGCCTGTAAGACAAAACCAGAGGCAAEST: gi|211442456|gb|FL443593.1|FL443593
genomic: CTCAGGCGATAATAATGATAAGCAGgtgacacatt ... tgcatcatagAATTTGACAGTCAAGGCTTTGGCTACGCCTGTAAGACAAAACCAGAGGCAA
EST: CAGGCGATAATAATGATAAGCAG AATTTGACAGTCAAGGCTTTGGCTACGCCTGTAAGACAAAACCAGAGGCAAEST: gi|211126998|gb|FL461335.1|FL461335
genomic: CAGGCGATAATAATGATAAGCAGgtgacacatt ... tgcatcatagAATTTGACAGTCAAGGCTTTGGCTACGCCTGTAAGACAAAACCAGAGGCAA
EST: TAGGAGCAGCCAGTGATGAATCATTCTCAGGCGATAATAATGATAAGCAG AATTTGACAGTCAAGGCTTTGGCTACGCCTGTAAGACAAAACCAGAGGCAAEST: gi|32870184|gb|CF009866.1|CF009866
genomic: TAGGAGCAGCCAGTGATGAATCATTCTCAGGCGATAATAATGATAAGCAGgtgacacatt ... tgcatcatagAATTTGACAGTCAAGGCTTTGGCTACGCCTGTAAGACAAAACCAGAGGCAA
EST: TAGGAGCAGCCAGTGATGAATCATTCTCAGGCGATAATAATGATAAGCAG AATTTGACAGTCAAGGCTTTGGCTACGCCTGTAAGACAAAACCAGAGGCAA
genomic: TAGGAGCAGCCAGTGATGAATCATTCTCAGGCGATAATAATGATAAGCAGgtgacacatt ... tgcatcatagAATTTGACAGTCAAGGCTTTGGCTACGCCTGTAAGACAAAACCAGAGGCAA
gatatcatcaatgaaaaaagattgtctgatctggttattggttcgtgcatcatagAATTTGACAGTCAAGGCTTTGGCTACGCCTGTAAGACAAAACCAGAGGCAAAGCCAGAGGAAACCGATTGAGAAAGCTAAGCAGAAGAAGATTCAAGCCC
gtctgat putative branch site (score: 4)
aatgaaaaaagatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgacacattgcttcaattgcttgacaatttagttatccagtgtctgatacgaataccttaatcaaagctattgttgttactagttggcttctttctaacatgtgatatttaccacttcgatatcatcaatgaaaaaagattgtctgatctggttattggttcgtgcatcatagAATTTGACAGTCAAGGCTTTGGCTACGCCTGTAAGACAAAACCAGAGGCAAAGCCAGAGGAAACCGATTGAGAAAGCTAAGCAGAAGAAGATTCAAGCCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG