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gtatgtgttattgtttattgcaacttttataagtacacattaatctattttccagattctcatcatattatattctgagtgtctgatagGTATTGGATTTCTTCAATAGTCGAATGGACATGCAACAATTAGATGGGGAATGGTCCGTGGATAAAGTGCTTGAAGTCATCAATAAAACTTGCCGTTCAT
species | Zea mays |
transcript | GRMZM2G078576_T03 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: CATTTAAAAATCATCCACGTTTTAATGAACTGCTTGAGAACATATACACT GTATTGGATTTCTTCAATAGTCGAATGGACATGCAACAATTAGATGGGGAAEST: gi|149083574|gb|EE172908.2|EE172908
genomic: CATTTAAAAATCATCCACGTTTTAATGAACTGCTTGAGAACATATACACTgtatgtgtta ... tgtctgatagGTATTGGATTTCTTCAATAGTCGAATGGACATGCAACAATTAGATGGGGAA
EST: CATTTAAAAATCATCCACGTTTTAATGAACTGCTTGAGAACATATACACT GTATTGGATTTCTTCAATAGTCGAATGGACATGCAACAATTAGATGGGGAAEST: gi|87155515|gb|DY400304.1|DY400304
genomic: CATTTAAAAATCATCCACGTTTTAATGAACTGCTTGAGAACATATACACTgtatgtgtta ... tgtctgatagGTATTGGATTTCTTCAATAGTCGAATGGACATGCAACAATTAGATGGGGAA
EST: CATTTAAAAATCATCCACGTTTTAATGAACTGCTTGAGAACATATACACT GTATTGGATTTCTTCAATAGTCGAATGGACATGCAACAATTAGATGGGGAAEST: gi|78111274|gb|DV529671.1|DV529671
genomic: CATTTAAAAATCATCCACGTTTTAATGAACTGCTTGAGAACATATACACTgtatgtgtta ... tgtctgatagGTATTGGATTTCTTCAATAGTCGAATGGACATGCAACAATTAGATGGGGAA
EST: CATTTAAAAATCATCCACGTTTTAATGAACTGCTTGAGAACATATACACT GTATTGGATTTCTTCAATAGTCGAATGGACATGCAACAATTAGATGGGGAAEST: gi|22472877|gb|BU037357.1|BU037357
genomic: CATTTAAAAATCATCCACGTTTTAATGAACTGCTTGAGAACATATACACTgtatgtgtta ... tgtctgatagGTATTGGATTTCTTCAATAGTCGAATGGACATGCAACAATTAGATGGGGAA
EST: CATTTAAAAATCATCCACGTTTTAATGAACTGCTTGAGAACATATACACT GTATTGGATTTCTTCAATAGTCGAATGGACATGCAACAATTAGATGGGGAAEST: gi|24766669|gb|CA401816.1|CA401816
genomic: CATTTAAAAATCATCCACGTTTTAATGAACTGCTTGAGAACATATACACTgtatgtgtta ... tgtctgatagGTATTGGATTTCTTCAATAGTCGAATGGACATGCAACAATTAGATGGGGAA
EST: CATTTAAAAATCATCCACGTTTTAATGAACTGCTTGAGAACATATACACT GTATTGGATTTCTTCAATAGTCGAATGGACATGCAACAATTAGATGGGGAAEST: gi|93282383|gb|EB674647.1|EB674647
genomic: CATTTAAAAATCATCCACGTTTTAATGAACTGCTTGAGAACATATACACTgtatgtgtta ... tgtctgatagGTATTGGATTTCTTCAATAGTCGAATGGACATGCAACAATTAGATGGGGAA
EST: CATTTAAAAATCATCCACGTTTTAATGAACTGCTTGAGAACATATACACT GTATTGGATTTCTTCAATAGTCGAATGGACATGCAACAATTAGATGGGGAA
genomic: CATTTAAAAATCATCCACGTTTTAATGAACTGCTTGAGAACATATACACTgtatgtgtta ... tgtctgatagGTATTGGATTTCTTCAATAGTCGAATGGACATGCAACAATTAGATGGGGAA
acacattaatctattttccagattctcatcatattatattctgagtgtctgatagGTATTGGATTTCTTCAATAGTCGAATGGACATGCAACAATTAGATGGGGAATGGTCCGTGGATAAAGTGCTTGAAGTCATCAATAAAACTTGCCGTTCAT
cattaat putative branch site (score: 3)
tcatcatattatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtgttattgtttattgcaacttttataagtacacattaatctattttccagattctcatcatattatattctgagtgtctgatagGTATTGGATTTCTTCAATAGTCGAATGGACATGCAACAATTAGATGGGGAATGGTCCGTGGATAAAGTGCTTGAAGTCATCAATAAAACTTGCCGTTCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG