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gtaacattttattaattaagcgcgcaatagtagcacgtggttttgcttcttgcttttgcataccagcatactacgcaaaagctcgtcatgtatatataaaagtttttgcttgtttgtggtttgattagcttcagcagtttcatcagccagctgtttactatgcatcatcttatctgtgaaatttccctagGCTTTGCACGAGGCTCTTATCAGGCAAGAGGAACTGCTCGCGAACATCGACAGCAAGGAGATTGCCAGGGCTCAG
species | Zea mays |
transcript | GRMZM2G073571_T02 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: CTGTGCGTCGTGTGGATGCATTGGAAGCTGAACTAATTGTAACAAAGAAG GCTTTGCACGAGGCTCTTATCAGGCAAEST: gi|166704541|gb|EG067751.1|EG067751
genomic: CTGTGCGTCGTGTGGATGCATTGGAAGCTGAACTAATTGTAACAAAGAAGgtaacatttt ... atttccctagGCTTTGCACGAGGCTCTTATCAGGCAA
EST: TGCGTCGTGTGGATGCATTGGAAGCTGAACTAATTGTAACAAAGAAG GCTTTGCACGAGGCTCTTATCAGGCAAGAGGAACTGCTCGCGAACATCGEST: gi|21891652|gb|BQ744865.1|BQ744865
genomic: TGCGTCGTGTGGATGCATTGGAAGCTGAACTAATTGTAACAAAGAAGgtaacatttt ... atttccctagGCTTTGCACGAGGCTCTTATCAGGCAAGAGGAACTGCTCGCGAACATCG
EST: CTGTGCGTCGTGTGGATGCATTGGAAGCCGAACTAATTGTAACAAAGAAG GCTTTGCACGAGGCTCTTATCAGGCAAGAGGAACTGCTCGCGAACATCGACEST: gi|3172014|gb|AJ006545.1|AJ006545
genomic: CTGTGCGTCGTGTGGATGCATTGGAAGCTGAACTAATTGTAACAAAGAAGgtaacatttt ... atttccctagGCTTTGCACGAGGCTCTTATCAGGCAAGAGGAACTGCTCGCGAACATCGAC
EST: CTGTGCGTCGTGTGGATGCATTGGAAGCCGAACTAATTGTAACAAAGAAG GCTTTGCACGAGGCTCTTATCAGGCAAGAGGAACTGCTCGCGAACATCGACEST: gi|15427246|gb|BI543068.1|BI543068
genomic: CTGTGCGTCGTGTGGATGCATTGGAAGCTGAACTAATTGTAACAAAGAAGgtaacatttt ... atttccctagGCTTTGCACGAGGCTCTTATCAGGCAAGAGGAACTGCTCGCGAACATCGAC
EST: CTGTGCGTCGTGTGGATGCATTGGAAGCTGAACTAATTGTAACAAAGAAG GCTTTGCACGAGGCTCTTATCAGGCAAGAGGAACTGCTCGCGAACATGGACEST: gi|166549613|gb|EG205430.1|EG205430
genomic: CTGTGCGTCGTGTGGATGCATTGGAAGCTGAACTAATTGTAACAAAGAAGgtaacatttt ... atttccctagGCTTTGCACGAGGCTCTTATCAGGCAAGAGGAACTGCTCGCGAACATCGAC
EST: TGCGTCGTGTGGATGCATTGGAAGCTGAACTAATTGTAACAAAGAAG GCTTTGCACGAGGCTCTTATCAGGACAAGAGGAACTGCTCGCGAACATCGEST: gi|60401555|gb|DN234362.1|DN234362
genomic: TGCGTCGTGTGGATGCATTGGAAGCTGAACTAATTGTAACAAAGAAGgtaacatttt ... atttccctagGCTTTGCACGAGGCTCTTATCAGG-CAAGAGGAACTGCTCGCGAACATCG
EST: CTGTGCGTCGTGTGGATGCATTGGAAGCTGAACTAATTGTAACAAAGAAG GCTTTGCACGAGGCTCTTATCAGGCAAGAGGAACTGCTCGCGAACATCGACEST: gi|58029614|gb|CX725041.1|CX725041
genomic: CTGTGCGTCGTGTGGATGCATTGGAAGCTGAACTAATTGTAACAAAGAAGgtaacatttt ... atttccctagGCTTTGCACGAGGCTCTTATCAGGCAAGAGGAACTGCTCGCGAACATCGAC
EST: CTGTGCGTCGTGTGGATGCATTGGAAGCTGAACTAATTGTAACAAAGAAG GCTTTGCACGAGGCTCTTATCAGGCAAGAGGAACTGCTCGCGAACATCGACEST: gi|20208502|gb|BQ134591.1|BQ134591
genomic: CTGTGCGTCGTGTGGATGCATTGGAAGCTGAACTAATTGTAACAAAGAAGgtaacatttt ... atttccctagGCTTTGCACGAGGCTCTTATCAGGCAAGAGGAACTGCTCGCGAACATCGAC
EST: CTGTGCGTCGTGTGGATGCATTGGAAGCCGAACTAATTGTAACAAAGAAG GCTTTGCACGAGGCTCTTATCAGGCAAGAGGAACTGCTCGCGAACATCGAC
genomic: CTGTGCGTCGTGTGGATGCATTGGAAGCTGAACTAATTGTAACAAAGAAGgtaacatttt ... atttccctagGCTTTGCACGAGGCTCTTATCAGGCAAGAGGAACTGCTCGCGAACATCGAC
agtttcatcagccagctgtttactatgcatcatcttatctgtgaaatttccctagGCTTTGCACGAGGCTCTTATCAGGCAAGAGGAACTGCTCGCGAACATCGACAGCAAGGAGATTGCCAGGGCTCAG
tttccct CT-rich tract
tttactat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacattttattaattaagcgcgcaatagtagcacgtggttttgcttcttgcttttgcataccagcatactacgcaaaagctcgtcatgtatatataaaagtttttgcttgtttgtggtttgattagcttcagcagtttcatcagccagctgtttactatgcatcatcttatctgtgaaatttccctagGCTTTGCACGAGGCTCTTATCAGGCAAGAGGAACTGCTCGCGAACATCGACAGCAAGGAGATTGCCAGGGCTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT