1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...aaaacactttataatttggaacgaagtgagcacatgccttgcataatacagctgctttcttacgttattgactaacccagatatttgttgccaatttcagGCGCCACGAGAGATACTAAATGTTACACCATGCCTGACAGATTTAGGAGTACTGGCGGCGTCTGTTCAAGATATGGTTTGAGCTTGTGCTTCGTATCTTC
species | Zea mays |
transcript | GRMZM2G069916_T05 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: GGACATGATTCAAGGAGGAGAGAGCGTTCACGCTCCAGGGAGCGCAGCAG GCGCCACGAGAGATACTAAATGTTACACCATGCCTGACAGATTTAGGAGTAEST: gi|30052552|gb|AI065841.2|AI065841
genomic: GGACATGATTCAAGGAGGAGAGAGCGTTCACGCTCCAGGGAGCGCAGCAGgtattgctga ... ccaatttcagGCGCCACGAGAGATACTAAATGTTACACCATGCCTGACAGATTTAGGAGTA
EST: GGACATGATTCAAGGAGGAGAGAGCGTTCACGCTCCAGGGAGCGCAGCAG GCGCCACGAGAGATACTAAATGTTACACCATGCCTGACAGATTTAGGAGTAEST: gi|9952074|gb|BE638657.1|BE638657
genomic: GGACATGATTCAAGGAGGAGAGAGCGTTCACGCTCCAGGGAGCGCAGCAGgtattgctga ... ccaatttcagGCGCCACGAGAGATACTAAATGTTACACCATGCCTGACAGATTTAGGAGTA
EST: GGACATGATTCAAGGAGGAGAGAGCGTTCACGCTCCAGGGAGCGCAGCAG GCGCCACGAGAGATACTAAATGTTACACCATGCCTGACAGATTTAGGAGTAEST: gi|148929409|gb|EC875422.2|EC875422
genomic: GGACATGATTCAAGGAGGAGAGAGCGTTCACGCTCCAGGGAGCGCAGCAGgtattgctga ... ccaatttcagGCGCCACGAGAGATACTAAATGTTACACCATGCCTGACAGATTTAGGAGTA
EST: GGACATGATTCAAGGAGGAGAGAGCGTTCACGCTCCAGGGAGCGCAGCAG GCGCCCCGAGAGATACTAAATGTTACACCATGCCTGACAGATTTAGGAGTAEST: gi|83278840|gb|DV942848.1|DV942848
genomic: GGACATGATTCAAGGAGGAGAGAGCGTTCACGCTCCAGGGAGCGCAGCAGgtattgctga ... ccaatttcagGCGCCACGAGAGATACTAAATGTTACACCATGCCTGACAGATTTAGGAGTA
EST: GGACATGATTCAAGGAGGAGAGAGCGTTCACGCTCCAGGGAGCGCAGCAG GCGCCACGAGAGATACTAAATGTTACACCATGCCTGACAGATTTAGGAGTAEST: gi|32833686|gb|CD973364.1|CD973364
genomic: GGACATGATTCAAGGAGGAGAGAGCGTTCACGCTCCAGGGAGCGCAGCAGgtattgctga ... ccaatttcagGCGCCACGAGAGATACTAAATGTTACACCATGCCTGACAGATTTAGGAGTA
EST: GGACATAATACAAGGAGGAGAGAGCGTTCACGCTCCAGGGAGCGCAGCAG GCGCCACGAGAGATACTAAATGGTTACACCATGCCTGACAGATTTAGGAGTEST: gi|149000972|gb|EE038212.2|EE038212
genomic: GGACATGATTCAAGGAGGAGAGAGCGTTCACGCTCCAGGGAGCGCAGCAGgtattgctga ... ccaatttcagGCGCCACGAGAGATACTAAATG-TTACACCATGCCTGACAGATTTAGGAGT
EST: GGACATGATTCAAGGAGGAGAGAGCGTTCACGCTCCAGGGAGCGCAGCAG GCGCCACGAGAGATACTAAATGTTACACCATCCCTGACAGATTTAGGAGTAEST: gi|148973851|gb|EE024992.2|EE024992
genomic: GGACATGATTCAAGGAGGAGAGAGCGTTCACGCTCCAGGGAGCGCAGCAGgtattgctga ... ccaatttcagGCGCCACGAGAGATACTAAATGTTACACCATGCCTGACAGATTTAGGAGTA
EST: GGACATGATTCAAGGAGGAGAGAGCGTTCACGCTCCAGGGAGCGCAGCAG GCGCCCCGAGAGATACTAAATGTTACCCCATCCCTGACAGATTTAGGAGTAEST: gi|60343955|gb|DN210928.1|DN210928
genomic: GGACATGATTCAAGGAGGAGAGAGCGTTCACGCTCCAGGGAGCGCAGCAGgtattgctga ... ccaatttcagGCGCCACGAGAGATACTAAATGTTACACCATGCCTGACAGATTTAGGAGTA
EST: GGACATGATTCAAGGAGGAGAGAGCGTTCACGCTCCAGGGAGCGCAGCAG GCGCCACGAGAGATACTAAATGTTACACCATGCCTGACAGATTTAGGAGTAEST: gi|211517868|gb|FL476359.1|FL476359
genomic: GGACATGATTCAAGGAGGAGAGAGCGTTCACGCTCCAGGGAGCGCAGCAGgtattgctga ... ccaatttcagGCGCCACGAGAGATACTAAATGTTACACCATGCCTGACAGATTTAGGAGTA
EST: GGACATGATTCAAGGAGGAGAGAGCGTTCACGCTCCAGGGAGCGCAGCAG GCGCCACGAGAGATACTAAATGTTACACCATGCCTGACAGATTTAGGAGTAEST: gi|211445567|gb|FL157339.1|FL157339
genomic: GGACATGATTCAAGGAGGAGAGAGCGTTCACGCTCCAGGGAGCGCAGCAGgtattgctga ... ccaatttcagGCGCCACGAGAGATACTAAATGTTACACCATGCCTGACAGATTTAGGAGTA
EST: GACATGATTCAAGGAGGAGAGAGCGTTCACGCTCCAGGGGAGCGCAGCAG GCGCCACGAGAGATACTAAATGTTACACCATGCCTGACAGATTTAGGAGTAEST: gi|89761162|gb|DY689288.1|DY689288
genomic: GACATGATTCAAGGAGGAGAGAGCGTTCACGCTCCA-GGGAGCGCAGCAGgtattgctga ... ccaatttcagGCGCCACGAGAGATACTAAATGTTACACCATGCCTGACAGATTTAGGAGTA
EST: GGACATGATTCAAGGAGGAGAGAGCGTTCACGCTCCAGGGAGCGCAGCAG GCGCCACGAGAGATACTAAATGTTACACCATGCCTGACAGATTTAGGAGTAEST: gi|88756296|gb|DY540437.1|DY540437
genomic: GGACATGATTCAAGGAGGAGAGAGCGTTCACGCTCCAGGGAGCGCAGCAGgtattgctga ... ccaatttcagGCGCCACGAGAGATACTAAATGTTACACCATGCCTGACAGATTTAGGAGTA
EST: GGACATGATTCAAGGAGGAGAGAGCGTTCACGCTCCAGGGAGCGCAGCAG GCGCCACGAGAGATACTAAATGTTACACCATGCCTGACAGATTTAGGAGTAEST: gi|32838976|gb|CD978657.1|CD978657
genomic: GGACATGATTCAAGGAGGAGAGAGCGTTCACGCTCCAGGGAGCGCAGCAGgtattgctga ... ccaatttcagGCGCCACGAGAGATACTAAATGTTACACCATGCCTGACAGATTTAGGAGTA
EST: GGACATGATTCAAGGAGGAGAGAGCGTTCACGCTCCAGGGAGCGCAGCAG GCGCCACGAGAGATACTAAATGGTTACACCATGCCTGACAGATTTAGGAGTEST: gi|211445566|gb|FL157338.1|FL157338
genomic: GGACATGATTCAAGGAGGAGAGAGCGTTCACGCTCCAGGGAGCGCAGCAGgtattgctga ... ccaatttcagGCGCCACGAGAGATACTAAATG-TTACACCATGCCTGACAGATTTAGGAGT
EST: GGACATGATTCAAGGAGGAGAGAGCGTTCACGCTCCAGGGAGCGCAGCAG GCGCCACGAGAGATACTAAATGTTACACCATGCCTGACAGATTTAGGAGTAEST: gi|71330189|gb|DR801853.1|DR801853
genomic: GGACATGATTCAAGGAGGAGAGAGCGTTCACGCTCCAGGGAGCGCAGCAGgtattgctga ... ccaatttcagGCGCCACGAGAGATACTAAATGTTACACCATGCCTGACAGATTTAGGAGTA
EST: GGACATGATTCAAGGAGGAGAGAGCGTTCACGCTCCAGGGAGCGCAGCAG GCGCCACGAGAGATACTAAATGTTACACCATGCCTGACAGATTTAGGAGTAEST: gi|88757903|gb|DY542044.1|DY542044
genomic: GGACATGATTCAAGGAGGAGAGAGCGTTCACGCTCCAGGGAGCGCAGCAGgtattgctga ... ccaatttcagGCGCCACGAGAGATACTAAATGTTACACCATGCCTGACAGATTTAGGAGTA
EST: GGACATGATTCAAGGAGGAGAGAGCGTTCACGCTCCAGGGAGCGCAGCAG GCGCCACGAGAGATACTAAATGTTACACCATGCCTGACAGATTTAGGAGTAEST: gi|83278696|gb|DV942704.1|DV942704
genomic: GGACATGATTCAAGGAGGAGAGAGCGTTCACGCTCCAGGGAGCGCAGCAGgtattgctga ... ccaatttcagGCGCCACGAGAGATACTAAATGTTACACCATGCCTGACAGATTTAGGAGTA
EST: GGACATGATTCAAGGAGGAGAGAGCGTTCACGCTCCAGGGAGCGCAGCAG GCGCCACGAGAGATACTAAATGTTACACCATGCCTGACAGATTTAGGAGTAEST: gi|76920399|gb|DV168154.1|DV168154
genomic: GGACATGATTCAAGGAGGAGAGAGCGTTCACGCTCCAGGGAGCGCAGCAGgtattgctga ... ccaatttcagGCGCCACGAGAGATACTAAATGTTACACCATGCCTGACAGATTTAGGAGTA
EST: GGACATGATTCAAGGAGGAGAGAGCGTTCACGCTCCAGGGAGCGCAGCAG GCGCCACGAGAGATACTAAATGTTACACCATCCCTGACAGATTTAGGAGTAEST: gi|60400106|gb|DN232913.1|DN232913
genomic: GGACATGATTCAAGGAGGAGAGAGCGTTCACGCTCCAGGGAGCGCAGCAGgtattgctga ... ccaatttcagGCGCCACGAGAGATACTAAATGTTACACCATGCCTGACAGATTTAGGAGTA
EST: GGACATGATTCAAGGAGGAGAGAGCGTTCACGCTCCAGGGAGCGCAGCAG GCGCCACGAGAGATACTAAATGTTACACCATGCCTGACAGATTTAGGAGTAEST: gi|8665973|gb|BE186789.1|BE186789
genomic: GGACATGATTCAAGGAGGAGAGAGCGTTCACGCTCCAGGGAGCGCAGCAGgtattgctga ... ccaatttcagGCGCCACGAGAGATACTAAATGTTACACCATGCCTGACAGATTTAGGAGTA
EST: GGACATGATTCAAGGAGGAGAGAGCGTTCACGCTCCAGGGAGCGCAGCAG GCGCCACGAGAGATACTAAATGTTACACCATGCCTGACAGATTTAAGAGTAEST: gi|88757902|gb|DY542043.1|DY542043
genomic: GGACATGATTCAAGGAGGAGAGAGCGTTCACGCTCCAGGGAGCGCAGCAGgtattgctga ... ccaatttcagGCGCCACGAGAGATACTAAATGTTACACCATGCCTGACAGATTTAGGAGTA
EST: GGACATGATTCAAGGAGGAGAGAGCGTTCACGCTCCAGGGAGCGCAGCAG GCGCCACGAGAGATACTAAATGTTACACCATCCCTGACAGATTTAGGAGTAEST: gi|148952946|gb|EE152419.2|EE152419
genomic: GGACATGATTCAAGGAGGAGAGAGCGTTCACGCTCCAGGGAGCGCAGCAGgtattgctga ... ccaatttcagGCGCCACGAGAGATACTAAATGTTACACCATGCCTGACAGATTTAGGAGTA
EST: GGACATGATTCAAGGAGGAGAGAGCGTTCCCGCTCCAGGGAGCGCAGCAG GCGCCCCGAGAGATACTAAATGTTACCCCATCCCTGACAGATTTAGGAGTA
genomic: GGACATGATTCAAGGAGGAGAGAGCGTTCACGCTCCAGGGAGCGCAGCAGgtattgctga ... ccaatttcagGCGCCACGAGAGATACTAAATGTTACACCATGCCTGACAGATTTAGGAGTA
atacagctgctttcttacgttattgactaacccagatatttgttgccaatttcagGCGCCACGAGAGATACTAAATGTTACACCATGCCTGACAGATTTAGGAGTACTGGCGGCGTCTGTTCAAGATATGGTTTGAGCTTGTGCTTCGTATCTTC
gactaac putative branch site (score: 1)
atatttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaacactttataatttggaacgaagtgagcacatgccttgcataatacagctgctttcttacgttattgactaacccagatatttgttgccaatttcagGCGCCACGAGAGATACTAAATGTTACACCATGCCTGACAGATTTAGGAGTACTGGCGGCGTCTGTTCAAGATATGGTTTGAGCTTGTGCTTCGTATCTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT