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gtatggtgttccgtattccacatccttactattttggtcagcatcgtggttatctgaaagcatgtatatttggtgtttttagATCAAGAGAGCACAGCAAGGATCGCAACGGCCGGTCGTCCAGGGATAGAGAACCAGAAAGGAGAGACAGGGTTGAGTCTCGAGATGGTAGAAGAGATTAT
species | Zea mays |
transcript | GRMZM2G069916_T01 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: GGAGCAGAGAAATAAAAGGAGACCGGGCAAAGCTGAAGATGATAGACG ATCAAGAGAGCACAGCAAGGATCGCAACGGCCGGTCGTCCAGGGATAGAGAEST: gi|32833686|gb|CD973364.1|CD973364
genomic: GGAGCAGAGAAATAAAAGGAGACCGGGCAAAGCTGAAGATGATAGACGgtatggtgtt ... gtgtttttagATCAAGAGAGCACAGCAAGGATCGCAACGGCCGGTCGTCCAGGGATAGAGA
EST: AAGCTGAAGATGATAGACG ATCAAGAGAGCACAGCAAGGATCGCATCGGCCGGTCGTCCAGGGATAGAGAEST: gi|88757903|gb|DY542044.1|DY542044
genomic: AAGCTGAAGATGATAGACGgtatggtgtt ... gtgtttttagATCAAGAGAGCACAGCAAGGATCGCAACGGCCGGTCGTCCAGGGATAGAGA
EST: GGAGCAGAGAAATAAAAGGAGACCGGGCAAAGCTGAAGATGATAGACG ATCAAGAGAGCACAGCAAGGATCGCAACGGCCGGTCGTCCAGGGATAGAGAEST: gi|83278840|gb|DV942848.1|DV942848
genomic: GGAGCAGAGAAATAAAAGGAGACCGGGCAAAGCTGAAGATGATAGACGgtatggtgtt ... gtgtttttagATCAAGAGAGCACAGCAAGGATCGCAACGGCCGGTCGTCCAGGGATAGAGA
EST: GGAGCAGAGAAATAAAAGGAGACCGGGCAAAGCTGAAGATGATAGACG ATCAAGAGAGCACAGCAAGGATCGCAACGGCCGGTCGTCCAGGGATAGAGAEST: gi|211016391|gb|FL363397.1|FL363397
genomic: GGAGCAGAGAAATAAAAGGAGACCGGGCAAAGCTGAAGATGATAGACGgtatggtgtt ... gtgtttttagATCAAGAGAGCACAGCAAGGATCGCAACGGCCGGTCGTCCAGGGATAGAGA
EST: GAGCAGAGAAATAAAAGGAGACCGGGCAAAGCTGAAGATGATAGACG ATCAAGAGAGCACAGCAAGGATCGCAACGGCCGGTCGTCCAGGGATAGAGAEST: gi|149000972|gb|EE038212.2|EE038212
genomic: GAGCAGAGAAATAAAAGGAGACCGGGCAAAGCTGAAGATGATAGACGgtatggtgtt ... gtgtttttagATCAAGAGAGCACAGCAAGGATCGCAACGGCCGGTCGTCCAGGGATAGAGA
EST: GGAGCAGAGAAATAAAAGGAGACCGGGCAAAGCTGAAGATGATAGACG ATCAAGAGAGCACAGCAAGGATCGCAACGGCCGGTCGTCCAGGGATAGAGAEST: gi|71312970|gb|DR793007.1|DR793007
genomic: GGAGCAGAGAAATAAAAGGAGACCGGGCAAAGCTGAAGATGATAGACGgtatggtgtt ... gtgtttttagATCAAGAGAGCACAGCAAGGATCGCAACGGCCGGTCGTCCAGGGATAGAGA
EST: GAGCAGAGAAATAAAAGGAGACCGGGCAAAGCTGAAGATGATAGACG ATCAAGAGAGCACAGCAAGGATCGCAACGGCCGGTCGTCCAGGGATAGAGAEST: gi|88756296|gb|DY540437.1|DY540437
genomic: GAGCAGAGAAATAAAAGGAGACCGGGCAAAGCTGAAGATGATAGACGgtatggtgtt ... gtgtttttagATCAAGAGAGCACAGCAAGGATCGCAACGGCCGGTCGTCCAGGGATAGAGA
EST: GGAGCAGGGAAATAAAAGGGAGACCGGGCAAAGCTGAAGATGATAGACG ATCAAGAGAGCACAGCAAGGATCGCAACGGCCGGTCGTCCAGGGATAGAGA
genomic: GGAGCAGAGAAATAAAA-GGAGACCGGGCAAAGCTGAAGATGATAGACGgtatggtgtt ... gtgtttttagATCAAGAGAGCACAGCAAGGATCGCAACGGCCGGTCGTCCAGGGATAGAGA
actattttggtcagcatcgtggttatctgaaagcatgtatatttggtgtttttagATCAAGAGAGCACAGCAAGGATCGCAACGGCCGGTCGTCCAGGGATAGAGAACCAGAAAGGAGAGACAGGGTTGAGTCTCGAGATGGTAGAAGAGATTAT
tccttac putative branch site (score: 2)
tgttttt putative PPT
atgtatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatggtgttccgtattccacatccttactattttggtcagcatcgtggttatctgaaagcatgtatatttggtgtttttagATCAAGAGAGCACAGCAAGGATCGCAACGGCCGGTCGTCCAGGGATAGAGAACCAGAAAGGAGAGACAGGGTTGAGTCTCGAGATGGTAGAAGAGATTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA