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...ggggtctacttgtggcactagcactgtcatgtgtaataactattcgatgtttacagtttacttaatacttatactaactaatgcattatgacttctgcagGCACTTCTGAAAAGAACTGTGGAAGACTATAAAATGGCCGGCTTCGACCCATCGACCAGCAGCTTAGAGATCCGGTTGATCCAAAGCCAGGACGAGATCC
species | Zea mays |
transcript | GRMZM2G069758_T02 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: ATCCTGATAGCCTCGAGAAAGCGGCAGAACTGGCAGTTTCCAGTTTGCAG GCACTTCTGAAAAGAACTGTGGAAGACTATAAAATGGCCGGCTTCGACCCAEST: gi|33097992|gb|CF057952.1|CF057952
genomic: ATCCTGATAGCCTCGAGAAAGCAGCAGAACTGGCAGTTTCCAGTTTGCAGgtataagagt ... acttctgcagGCACTTCTGAAAAGAACTGTGGAAGACTATAAAATGGCCGGCTTCGACCCA
EST: ATCCTGATAGCCTCGAGAAAGCGGCAGAACTGGCAGTTTCCAGTTTGCAG GCACTTCTGAAAAGAACTGTGGAAGACTATAAAATGGCCGGCTTCGACCCAEST: gi|32823768|gb|CD963490.1|CD963490
genomic: ATCCTGATAGCCTCGAGAAAGCAGCAGAACTGGCAGTTTCCAGTTTGCAGgtataagagt ... acttctgcagGCACTTCTGAAAAGAACTGTGGAAGACTATAAAATGGCCGGCTTCGACCCA
EST: ATCCTGATAGCCTCGAGAAAGCGGCAGAACTGGCAGTTTCCAGTTTGCAG GCACTTCTGAAAAGAACTGTGGAAGACTATAAAATGGCCGGCTTCGACCCAEST: gi|33096068|gb|CF056062.1|CF056062
genomic: ATCCTGATAGCCTCGAGAAAGCAGCAGAACTGGCAGTTTCCAGTTTGCAGgtataagagt ... acttctgcagGCACTTCTGAAAAGAACTGTGGAAGACTATAAAATGGCCGGCTTCGACCCA
EST: ATCCTGATAGCCTCGAGAAAGCGGCAGAACTGGCAGTTTCCAGTTTGCAG GCACTTCTGAAAAGAACTGTGGAAGACTATAAAATGGCCGGCTTCGACCCAEST: gi|8102609|gb|AW927412.1|AW927412
genomic: ATCCTGATAGCCTCGAGAAAGCAGCAGAACTGGCAGTTTCCAGTTTGCAGgtataagagt ... acttctgcagGCACTTCTGAAAAGAACTGTGGAAGACTATAAAATGGCCGGCTTCGACCCA
EST: ATCCTGATAGCCTCGAGAAAGCGGCAGAACTGGCAGTTTCCAGTTTGCAG GCACTTTTGAAAAGAACTGTGGAAGACTATAAAATGGCCGGCTTCGACCCAEST: gi|17931888|gb|BM268848.1|BM268848
genomic: ATCCTGATAGCCTCGAGAAAGCAGCAGAACTGGCAGTTTCCAGTTTGCAGgtataagagt ... acttctgcagGCACTTCTGAAAAGAACTGTGGAAGACTATAAAATGGCCGGCTTCGACCCA
EST: ATCCTGATAGCCTCGAGAAAGCAGCAGAACTGGCAGTTTCCAGTTTGCAG GCACTTCTGAAAAGAACTGTGGAAGACTATAAAATGGCCGGCTTCGACCCAEST: gi|67022839|gb|CO451588.1|CO451588
genomic: ATCCTGATAGCCTCGAGAAAGCAGCAGAACTGGCAGTTTCCAGTTTGCAGgtataagagt ... acttctgcagGCACTTCTGAAAAGAACTGTGGAAGACTATAAAATGGCCGGCTTCGACCCA
EST: ATCCTGATAGCCTCGAGAAAGCGGCAGAACTGGCAGTTTCCAGTTTGCAG GCACTTCTGAAAAGAACTGTGGAAGACTATAAAATGGCCGGCTTCGACCCAEST: gi|40303606|gb|CK347993.1|CK347993
genomic: ATCCTGATAGCCTCGAGAAAGCAGCAGAACTGGCAGTTTCCAGTTTGCAGgtataagagt ... acttctgcagGCACTTCTGAAAAGAACTGTGGAAGACTATAAAATGGCCGGCTTCGACCCA
EST: ATCCTGATAGCCTCGAGAAAGCGGCAGAACTGGCAGTTTCCAGTTTGCAG GCACTTCTGAAAAGAACTGTGGAAGACTATAAAATGGCCGGCTTCGACCCAEST: gi|16922789|gb|BM075781.1|BM075781
genomic: ATCCTGATAGCCTCGAGAAAGCAGCAGAACTGGCAGTTTCCAGTTTGCAGgtataagagt ... acttctgcagGCACTTCTGAAAAGAACTGTGGAAGACTATAAAATGGCCGGCTTCGACCCA
EST: ATCCTGATAGCCTCGAGAAAGCAGCAGAACTGGCAGTTTCCAGTTTGCAG GCACTTCTGAAAAGAACTGTGGAAGACTATAAAATGGCCGGCTTCGACCCA
genomic: ATCCTGATAGCCTCGAGAAAGCAGCAGAACTGGCAGTTTCCAGTTTGCAGgtataagagt ... acttctgcagGCACTTCTGAAAAGAACTGTGGAAGACTATAAAATGGCCGGCTTCGACCCA
gatgtttacagtttacttaatacttatactaactaatgcattatgacttctgcagGCACTTCTGAAAAGAACTGTGGAAGACTATAAAATGGCCGGCTTCGACCCATCGACCAGCAGCTTAGAGATCCGGTTGATCCAAAGCCAGGACGAGATCC
cttctgc CT-rich tract
tttacttaatacttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggggtctacttgtggcactagcactgtcatgtgtaataactattcgatgtttacagtttacttaatacttatactaactaatgcattatgacttctgcagGCACTTCTGAAAAGAACTGTGGAAGACTATAAAATGGCCGGCTTCGACCCATCGACCAGCAGCTTAGAGATCCGGTTGATCCAAAGCCAGGACGAGATCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC