1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
gtaagacaatatgttcttactcttgctattctaaaattttcacttgaggctttacttttgcctgtgtcaccgctaaatttgaaatcacctaagtggtgtccttacagctgtgtgatgtttctgccaattccagAGCTTCAATCCTATGTCTGAACCATCTGATGAATGGGAAAACAAACTTGACATAAGCCCAGAACAACAATTTAGTCAGTCAAGGGAGTTTGGTGGATTAG
species | Zea mays |
transcript | GRMZM2G064613_T01 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: ATGATATTTGTGAGTTTGCTGACGAAGATAATGTCCCAATGGTTGGATCT AGCTTCAATCCTATGTCTGAACCATCTGATGAATGGGAAAACAAACTTGACEST: gi|71310781|gb|DR791686.1|DR791686
genomic: ATGATATTTGTGAGTTTGCTGACGAAGATAATGTCCCAATGGTTGGATCTgtaagacaat ... ccaattccagAGCTTCAATCCTATGTCTGAACCATCTGATGAATGGGAAAACAAACTTGAC
EST: ATGATATTTGTGAGTTTGCTGACGAAGATAATGTCCCAA----T-G---- AGCTTCAATCCTATGTCTGAACCATCTGATGAATGGGAAAACAAACTTGACEST: gi|61118375|gb|DN559336.1|DN559336
genomic: ATGATATTTGTGAGTTTGCTGACGAAGATAATGTCCCAATGGTTGGATCTgtaagacaat ... ccaattccagAGCTTCAATCCTATGTCTGAACCATCTGATGAATGGGAAAACAAACTTGAC
EST: ATGATATTTGTGAGTTTGCTGACGAAGATAATGTCCCAATGGTTGGATCT AGCTTCAATCCTATGTCTGAACCATCTGATGAATGGGAAAACAAACTTGACEST: gi|26558024|gb|CA830259.1|CA830259
genomic: ATGATATTTGTGAGTTTGCTGACGAAGATAATGTCCCAATGGTTGGATCTgtaagacaat ... ccaattccagAGCTTCAATCCTATGTCTGAACCATCTGATGAATGGGAAAACAAACTTGAC
EST: ATGATATTTGTGAGTTTGCTGACGAAGATAATGTCCCAATGGTTGGATCT AGCTTCAATCCTATGTCTGAACCATCTGATGAATGGGAAAACAAACTTGAC
genomic: ATGATATTTGTGAGTTTGCTGACGAAGATAATGTCCCAATGGTTGGATCTgtaagacaat ... ccaattccagAGCTTCAATCCTATGTCTGAACCATCTGATGAATGGGAAAACAAACTTGAC
ttgaaatcacctaagtggtgtccttacagctgtgtgatgtttctgccaattccagAGCTTCAATCCTATGTCTGAACCATCTGATGAATGGGAAAACAAACTTGACATAAGCCCAGAACAACAATTTAGTCAGTCAAGGGAGTTTGGTGGATTAG
tccttac putative branch site (score: 12)
tttctgcc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagacaatatgttcttactcttgctattctaaaattttcacttgaggctttacttttgcctgtgtcaccgctaaatttgaaatcacctaagtggtgtccttacagctgtgtgatgtttctgccaattccagAGCTTCAATCCTATGTCTGAACCATCTGATGAATGGGAAAACAAACTTGACATAAGCCCAGAACAACAATTTAGTCAGTCAAGGGAGTTTGGTGGATTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA