1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
...tcaagtctctgaaagaaatacatttttcctgctgctgctcatatttttctgtactcgctattgttgggtgtatgaactatgaactcaccttatattgcagGAAGCGCTTCTATGGCTCAAGTCTATAATTCAGGAAACAGGGAGCGACGTTACGACAGACCAACTCAAAGACTATGTCTGGAAGACACTGAAGAGTGGAA
species | Zea mays |
transcript | GRMZM2G063909_T03 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: CATCATCTGTGAATGGGTTAGCTGGGCCACTACATGGCCTTGCAAATCAG GAAGCGCTTCTATGGCTCAAGTCTATAATTCAGGAAACAGGGAGCGACGTTEST: gi|60345083|gb|DN212056.1|DN212056
genomic: CATCATCTGTGAATGGGTTAGCTGGGCCACTACATGGCCTTGCAAATCAGgtatgctcag ... tatattgcagGAAGCGCTTCTATGGCTCAAGTCTATAATTCAGGAAACAGGGAGCGACGTT
EST: CATCATCTGTGAATGGGTTAGCTGGGCCACTACATGGCCTTGCAAATCAG GAAGCGCTTCTATGGCTCAAGTCTATAATTCAGGAAACAGGGAGCGACGTTEST: gi|40334210|gb|CK368280.1|CK368280
genomic: CATCATCTGTGAATGGGTTAGCTGGGCCACTACATGGCCTTGCAAATCAGgtatgctcag ... tatattgcagGAAGCGCTTCTATGGCTCAAGTCTATAATTCAGGAAACAGGGAGCGACGTT
EST: CATCATCTGTGAATGGGTT-GCTGGGCCACTACATGGCCTTGCAAATCAG GAAGCGCTTCTATGGCTCAAGTCTATAATTCAGGAAACAGGGAGCGACGTTEST: gi|60400601|gb|DN233408.1|DN233408
genomic: CATCATCTGTGAATGGGTTAGCTGGGCCACTACATGGCCTTGCAAATCAGgtatgctcag ... tatattgcagGAAGCGCTTCTATGGCTCAAGTCTATAATTCAGGAAACAGGGAGCGACGTT
EST: CCACTACATGGCCTTGCAAATCAG GAAGCGCTTCTATGGCTCAAGTCTATAATTCAGGAAACAGGGAGCGACGTT
genomic: CCACTACATGGCCTTGCAAATCAGgtatgctcag ... tatattgcagGAAGCGCTTCTATGGCTCAAGTCTATAATTCAGGAAACAGGGAGCGACGTT
tttctgtactcgctattgttgggtgtatgaactatgaactcaccttatattgcagGAAGCGCTTCTATGGCTCAAGTCTATAATTCAGGAAACAGGGAGCGACGTTACGACAGACCAACTCAAAGACTATGTCTGGAAGACACTGAAGAGTGGAA
aactcac putative branch site (score: 2)
ctcacctt CT-rich tract
ttatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcaagtctctgaaagaaatacatttttcctgctgctgctcatatttttctgtactcgctattgttgggtgtatgaactatgaactcaccttatattgcagGAAGCGCTTCTATGGCTCAAGTCTATAATTCAGGAAACAGGGAGCGACGTTACGACAGACCAACTCAAAGACTATGTCTGGAAGACACTGAAGAGTGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA