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...gcatacttcaccactgaaagaacaaatacattttttttctgctgcttttatttttatataattgctgctgttgtgtgtatgaacataccatatattgcagGAAGTGCTTTTATGGATCAAATCTGTAATTGAGGAAACTGGGAGTGGTGTTACCACAGATCAACTCAAAGACTATGTCTGGAAGACACTAAAGAGTGGAA
species | Zea mays |
transcript | GRMZM2G063851_T02 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: CAGCGGC-CTAAATGGGCTAGCTGGGCCACTGCATGGCCTTGCAAATCAG GAAGTGCTTTTATGGATCAAATCTGTAATTGAGGAAACTGGGAGTGGTGTTEST: gi|78179069|gb|DV549442.1|DV549442
genomic: CAGCGGCTCTAAATGGGCTAGCTGGGCCACTGCATGGCCTTGCAAATCAGgtgtgttcag ... tatattgcagGAAGTGCTTTTATGGATCAAATCTGTAATTGAGGAAACTGGGAGTGGTGTT
EST: CAGCGGCTCTAAATGGGCTAGCTGGGCCACTGCATGGCCTTGCAAATCAG GAAGTGCTTTTATGGATCAAATCTGTAATTGAGGAAACTGGGAGTGGTGTTEST: gi|31364242|gb|CD448597.1|CD448597
genomic: CAGCGGCTCTAAATGGGCTAGCTGGGCCACTGCATGGCCTTGCAAATCAGgtgtgttcag ... tatattgcagGAAGTGCTTTTATGGATCAAATCTGTAATTGAGGAAACTGGGAGTGGTGTT
EST: CAGCGGCTCTAAATGGGCTAGCTGGGCCACTGCATGGCCTTGCAAATCAG GAAGTGCTTTTATGGATCAAATCTGTAATTGAGGAAACTGGGAGTGGTGTTEST: gi|76010584|gb|DT937754.1|DT937754
genomic: CAGCGGCTCTAAATGGGCTAGCTGGGCCACTGCATGGCCTTGCAAATCAGgtgtgttcag ... tatattgcagGAAGTGCTTTTATGGATCAAATCTGTAATTGAGGAAACTGGGAGTGGTGTT
EST: CATGGCCTTGCAAATCAG GAAGTGCTTTTATGGATCAAATCTGTAATTGAGGAAACTGGGAGTGGTGTTEST: gi|6964715|gb|AW433408.1|AW433408
genomic: CATGGCCTTGCAAATCAGgtgtgttcag ... tatattgcagGAAGTGCTTTTATGGATCAAATCTGTAATTGAGGAAACTGGGAGTGGTGTT
EST: CAGCGGCTCTAAATGGGCTAGCTGGGCCACTGCATGGCCTTGCAAATCAG GAAGTGCTTTTATGGATCAAATCTGTAATTGAGGAAACTGGGAGTGGTGTTEST: gi|76010585|gb|DT937755.1|DT937755
genomic: CAGCGGCTCTAAATGGGCTAGCTGGGCCACTGCATGGCCTTGCAAATCAGgtgtgttcag ... tatattgcagGAAGTGCTTTTATGGATCAAATCTGTAATTGAGGAAACTGGGAGTGGTGTT
EST: CAGCGGCTCTAAATGGGCTAGCTGGGCCACTGCATGGCCTTGCAAATCAG GAAGTGCTTTTATGGATCAAATCTGTAATTGAGGAAACTGGGAGTGGTGTTEST: gi|7145414|gb|AW506895.1|AW506895
genomic: CAGCGGCTCTAAATGGGCTAGCTGGGCCACTGCATGGCCTTGCAAATCAGgtgtgttcag ... tatattgcagGAAGTGCTTTTATGGATCAAATCTGTAATTGAGGAAACTGGGAGTGGTGTT
EST: CAGCGGCTCTAAATGGGCTAGCTGGGCCACTGCATGGCCTTGCAAATCAG GAAGTGCTTTTATGGATCAAATCTGTAATTGAGGAAACTGAGAGTGGTGTTEST: gi|116825307|gb|EC869024.1|EC869024
genomic: CAGCGGCTCTAAATGGGCTAGCTGGGCCACTGCATGGCCTTGCAAATCAGgtgtgttcag ... tatattgcagGAAGTGCTTTTATGGATCAAATCTGTAATTGAGGAAACTGGGAGTGGTGTT
EST: CAGCGGCTCTAAATGGGCTAGCTGGGCCACTGCATGGCCTTGCAAATCAG GAAGTGCTTTTATGGATCAAATCTGTAATTGAGGAAACTGGGAGCGGTGTT
genomic: CAGCGGCTCTAAATGGGCTAGCTGGGCCACTGCATGGCCTTGCAAATCAGgtgtgttcag ... tatattgcagGAAGTGCTTTTATGGATCAAATCTGTAATTGAGGAAACTGGGAGTGGTGTT
ttttatttttatataattgctgctgttgtgtgtatgaacataccatatattgcagGAAGTGCTTTTATGGATCAAATCTGTAATTGAGGAAACTGGGAGTGGTGTTACCACAGATCAACTCAAAGACTATGTCTGGAAGACACTAAAGAGTGGAA
tttttatataattgct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcatacttcaccactgaaagaacaaatacattttttttctgctgcttttatttttatataattgctgctgttgtgtgtatgaacataccatatattgcagGAAGTGCTTTTATGGATCAAATCTGTAATTGAGGAAACTGGGAGTGGTGTTACCACAGATCAACTCAAAGACTATGTCTGGAAGACACTAAAGAGTGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA