Sequence
atgc intronic sequence ATGC exonic sequencegtattgtttatcctgcattgctctcctgtgtccattaatatgtcaactaaactactacctatttctacagCAAGATCGAAGAGAAGCGTGGTGTGACTGTTACAGATAATGGGAACACAGAGGTAAAAGCATCACCTTCATTGGCAAACGGGATCCATTCTGAACCTATG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G061681_T02 (Zea mays), 3'ss of exon 13
lower sequence: LOC_Os01g42950.1 (Oryza sativa), 3'ss of exon 13
gtattgtttatcctgcattgctctcc-tgtgtccattaatatgtcaactaaactactacctatttctacagCAAGATCGAAGAGAAGCGTGGTGTGACTGTTACAGATAATGGGAACACAGAGGTAAAAGCATCACCTTCATTGGCAAACGGGATCCATTCTGAACCTATG
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gtaccttttgtcccaccacacttgcgatgcgttaatcaatatgccaactaaattagtgcctacttctacagCAAGATTGAGGAGAAGCGTGGTGTGACTGTTACAGATAATGGGAATACAGAGGTAAAAGTATCACCCTCATTGGCTAATGGGATTCATTCTGAGCCATTG
upper sequence: GRMZM2G061681_T02 (Zea mays), 3'ss of exon 13
lower sequence: LOC_Os01g42950.2 (Oryza sativa), 3'ss of exon 13
gtattgtttatcctgcattgctctcc-tgtgtccattaatatgtcaactaaactactacctatttctacagCAAGATCGAAGAGAAGCGTGGTGTGACTGTTACAGATAATGGGAACACAGAGGTAAAAGCATCACCTTCATTGGCAAACGGGATCCATTCTGAACCTATG----
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gtaccttttgtcccaccacacttgcgatgcgttaatcaatatgccaactaaattagtgcctacttctacagcaagATTGAGGAGAAGCGTGGTGTGACTGTTACAGATAATGGGAATACAGAGGTAAAAGTATCACCCTCATTGGCTAATGGGATTCATTCTGAGCCATTGTCACMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211454621|gb|FL182680.1|FL182680EST: AATGTACAACAATTTGCCAAGTATATGCTATTTGTCAAGGACATTACAAG CAAGATCGAAGAGAAGCGTGGTGTGACTGTTACAGATAATGGGAACACAGA
genomic: AATGTACAACAATTTGCCAAGTATATGCTATTTGTCAAGGACATTACAAGgtattgttta ... atttctacagCAAGATCGAAGAGAAGCGTGGTGTGACTGTTACAGATAATGGGAACACAGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cattgctctcctgtgtccattaatatgtcaactaaactactacctatttctacagCAAGATCGAAGAGAAGCGTGGTGTGACTGTTACAGATAATGGGAACACAGAGGTAAAAGCATCACCTTCATTGGCAAACGGGATCCATTCTGAACCTATG
aactaaa putative branch site (score: 2)
cctatttct putative PPT
attaatatgt TA-rich tract