1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...gctgttccgctggaaaccaaacacccaaaaaattataaatggagccgctctattctccactcaacaaaacacatctgagagtttctgctctttctttcagGTTGCAATAGACACAGCGGCACCACTTGAGAATGATTCAGCTGCTGGTGGGTACATTGATCCAATGGATCTTTACGGAGCTTATGGTTCAATGAGATCTT
species | Zea mays |
transcript | GRMZM2G060977_T05 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: GTGTGGCAGAACGAGTAGCTCGTAGAAGCCATGAAATTCTAGGCCATGAG GTTGCAATAGACACAGCGGCACCACTTGAGAATGATTCAGCTGCTGGTGGGEST: gi|78107953|gb|DV526371.1|DV526371
genomic: GTGTGGCAGAACGAGTAGCTCGTAGAAGCCATGAAATTCTAGGCCATGAGgtaaggctgc ... tttctttcagGTTGCAATAGACACAGCGGCACCACTTGAGAATGATTCAGCTGCTGGTGGG
EST: GTGTGGCAGAACGAGTAGCTCGTAGAAGCCATGAAATTTTAGGCCATGAG GTTGCAATAGACACAGCGGCACCACTTGAGAATGATTCAGCTGCTGGTGGGEST: gi|60352542|gb|DN219515.1|DN219515
genomic: GTGTGGCAGAACGAGTAGCTCGTAGAAGCCATGAAATTCTAGGCCATGAGgtaaggctgc ... tttctttcagGTTGCAATAGACACAGCGGCACCACTTGAGAATGATTCAGCTGCTGGTGGG
EST: GTGTGGCAGAACGAGTAGCTCGTAGAAGCCATGAAATTCTAGGCCATGAG GTTGCAATAGACACAGCGGCACCACTTGAGAATGATTCAGCTGCTGGTGGGEST: gi|148949106|gb|EC894535.2|EC894535
genomic: GTGTGGCAGAACGAGTAGCTCGTAGAAGCCATGAAATTCTAGGCCATGAGgtaaggctgc ... tttctttcagGTTGCAATAGACACAGCGGCACCACTTGAGAATGATTCAGCTGCTGGTGGG
EST: GTGTGGCAGAACGAGTAGCTCGTAGAAGCCATGAAATTCTAGGCCATGAG GTTGCAATAGACACAGCGGCACCACTTGAGAATGATTCAGCTGCTGGTGGGEST: gi|6538840|gb|AW224979.1|AW224979
genomic: GTGTGGCAGAACGAGTAGCTCGTAGAAGCCATGAAATTCTAGGCCATGAGgtaaggctgc ... tttctttcagGTTGCAATAGACACAGCGGCACCACTTGAGAATGATTCAGCTGCTGGTGGG
EST: GTGTGGCAGAACGAGTAGCTCGTAGAAGCCATGAAATTCTAGGCCATGAG GTTGCAATAGACCCAGCGGCACCACTTGAGAATGATTCAGCTGCTGGTGGGEST: gi|149085023|gb|EE174532.2|EE174532
genomic: GTGTGGCAGAACGAGTAGCTCGTAGAAGCCATGAAATTCTAGGCCATGAGgtaaggctgc ... tttctttcagGTTGCAATAGACACAGCGGCACCACTTGAGAATGATTCAGCTGCTGGTGGG
EST: GTGTGGCAGAACGAGTAGTTCGTAGAAGCCATGAAATTTTAGGCCATGAG GTTGCAATAGACACAGCGGCCCCCCTTGAGAATGATTCAGCTGCTGGTGGGEST: gi|113702665|gb|EE680169.1|EE680169
genomic: GTGTGGCAGAACGAGTAGCTCGTAGAAGCCATGAAATTCTAGGCCATGAGgtaaggctgc ... tttctttcagGTTGCAATAGACACAGCGGCACCACTTGAGAATGATTCAGCTGCTGGTGGG
EST: GTGTGGCAGAACGAGTAGCTCGTAGAAGCCATGAAATTCTAGGCCATGAG GTTGCAATAGACACAGCGGCACCACTTGAGAATGATTCAGCTGCTGGTGGGEST: gi|9730867|gb|BE509619.1|BE509619
genomic: GTGTGGCAGAACGAGTAGCTCGTAGAAGCCATGAAATTCTAGGCCATGAGgtaaggctgc ... tttctttcagGTTGCAATAGACACAGCGGCACCACTTGAGAATGATTCAGCTGCTGGTGGG
EST: GTGTGGCAGAACGAGTAGCTCGTAGAAGCCATGAAATTCTAGGCCATGAG GTTGCAATAGACACAGCGGCACCACTTGAGAATGATTCAGCTGCTGGTGGGEST: gi|37395454|gb|CF635007.1|CF635007
genomic: GTGTGGCAGAACGAGTAGCTCGTAGAAGCCATGAAATTCTAGGCCATGAGgtaaggctgc ... tttctttcagGTTGCAATAGACACAGCGGCACCACTTGAGAATGATTCAGCTGCTGGTGGG
EST: GTGTGGCAGAACGAGTAGCTCGTAGAAGCCATGAAATTCTAGGCCATGAG GTTGCAATAGACACAGCGGCACCACTTGAGAATGATTCAGCTGCTGGTGGGEST: gi|60342148|gb|DN209121.1|DN209121
genomic: GTGTGGCAGAACGAGTAGCTCGTAGAAGCCATGAAATTCTAGGCCATGAGgtaaggctgc ... tttctttcagGTTGCAATAGACACAGCGGCACCACTTGAGAATGATTCAGCTGCTGGTGGG
EST: GTGTGGCAGAACGAGTAGCTCGTAGAAGCCATGAAATTCTAGGCCATGAG GTTGCAATAGACACAGCGGCACCACTTGAGAATGATTCAGCTGCTGGTGGGEST: gi|60342166|gb|DN209139.1|DN209139
genomic: GTGTGGCAGAACGAGTAGCTCGTAGAAGCCATGAAATTCTAGGCCATGAGgtaaggctgc ... tttctttcagGTTGCAATAGACACAGCGGCACCACTTGAGAATGATTCAGCTGCTGGTGGG
EST: GTGTGGCAGAACGAGTAGCTCGTAGAAGCCATGAAATTCTAGGCCATGAG GTTGCAATAGACACAGCGGCACCACTTGAGAATGATTCAGCTGCTGGTGGGEST: gi|88746930|gb|DY531071.1|DY531071
genomic: GTGTGGCAGAACGAGTAGCTCGTAGAAGCCATGAAATTCTAGGCCATGAGgtaaggctgc ... tttctttcagGTTGCAATAGACACAGCGGCACCACTTGAGAATGATTCAGCTGCTGGTGGG
EST: GTGTGGCAGAACGAGTAGCTCGTAGAAGCCATGAAATTTTAGGCCATGAG GTTGCAATAGACACAGCGGCACCACTTGAGAATGATTCAGCTGCTGGTGGGEST: gi|148942651|gb|EC887670.2|EC887670
genomic: GTGTGGCAGAACGAGTAGCTCGTAGAAGCCATGAAATTCTAGGCCATGAGgtaaggctgc ... tttctttcagGTTGCAATAGACACAGCGGCACCACTTGAGAATGATTCAGCTGCTGGTGGG
EST: GTGTGGCAGAACGAGTAGTTCGTAGAAGCCATGAAATTTTAGGCCATGGG GTTGCAATAGACACAGCGGCCCCCCTTGAGAATGATTCAGCTGCTGGTGGGEST: gi|60397921|gb|DN230737.1|DN230737
genomic: GTGTGGCAGAACGAGTAGCTCGTAGAAGCCATGAAATTCTAGGCCATGAGgtaaggctgc ... tttctttcagGTTGCAATAGACACAGCGGCACCACTTGAGAATGATTCAGCTGCTGGTGGG
EST: AACGAGTAGCTCGTAGAAGCCCTGAAATTCTAGGCCATGAG GTTGCAATAGACACAGCGGCACCACTTGAGAATGATTCAGCTGCTGGTGGGEST: gi|211424816|gb|FL445164.1|FL445164
genomic: AACGAGTAGCTCGTAGAAGCCATGAAATTCTAGGCCATGAGgtaaggctgc ... tttctttcagGTTGCAATAGACACAGCGGCACCACTTGAGAATGATTCAGCTGCTGGTGGG
EST: GTGTGGCAGAACGAGTAGCTCGTAGAAGCCATGAAATTCTAGGCCATGAG GTTGCAATAGACACAGCGGCACCACTTGAGAATGATTCAGCTGCTGGTGGGEST: gi|211138006|gb|FL213711.1|FL213711
genomic: GTGTGGCAGAACGAGTAGCTCGTAGAAGCCATGAAATTCTAGGCCATGAGgtaaggctgc ... tttctttcagGTTGCAATAGACACAGCGGCACCACTTGAGAATGATTCAGCTGCTGGTGGG
EST: GTGTGGCAGAACGAGTAGCTCGTAGAAGCCATGAAATTCTAGGCCATGAG GTTGCAATAGACACAGCGGCACCACTTGAGAATGATTCAGCTGCTGGTGGGEST: gi|37397094|gb|CF635842.1|CF635842
genomic: GTGTGGCAGAACGAGTAGCTCGTAGAAGCCATGAAATTCTAGGCCATGAGgtaaggctgc ... tttctttcagGTTGCAATAGACACAGCGGCACCACTTGAGAATGATTCAGCTGCTGGTGGG
EST: GTGGCAGAACGAGTAGCTCGTAGAAGCCATGAAATTCTAGGCCATGAG GTTGCAATAGACACAGCGGCACCACTTGAGAATGATTCAGCTGCTGGTGGGEST: gi|32864876|gb|CF004558.1|CF004558
genomic: GTGGCAGAACGAGTAGCTCGTAGAAGCCATGAAATTCTAGGCCATGAGgtaaggctgc ... tttctttcagGTTGCAATAGACACAGCGGCACCACTTGAGAATGATTCAGCTGCTGGTGGG
EST: GTGTGGCAGAACGAGTAGCTCGTAGAAGCCATGAAATTCTAGGCCATGAG GTTGCAATAGACACAGCGGCACCACTTGAGAATGATTCAGCTGCTGGTGGGEST: gi|40336792|gb|CK370862.1|CK370862
genomic: GTGTGGCAGAACGAGTAGCTCGTAGAAGCCATGAAATTCTAGGCCATGAGgtaaggctgc ... tttctttcagGTTGCAATAGACACAGCGGCACCACTTGAGAATGATTCAGCTGCTGGTGGG
EST: GTGTGGCAGAACGAGTAGCTCGTAGAAGCCATGAAATTCTAGGCCATGAG GTTGCAATAGACACAGCGGCACCACTTGAGAATGATTCAGCTGCTGGTGGG
genomic: GTGTGGCAGAACGAGTAGCTCGTAGAAGCCATGAAATTCTAGGCCATGAGgtaaggctgc ... tttctttcagGTTGCAATAGACACAGCGGCACCACTTGAGAATGATTCAGCTGCTGGTGGG
cgctctattctccactcaacaaaacacatctgagagtttctgctctttctttcagGTTGCAATAGACACAGCGGCACCACTTGAGAATGATTCAGCTGCTGGTGGGTACATTGATCCAATGGATCTTTACGGAGCTTATGGTTCAATGAGATCTT
tttctgctctttcttt CT-rich tract
aacaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gctgttccgctggaaaccaaacacccaaaaaattataaatggagccgctctattctccactcaacaaaacacatctgagagtttctgctctttctttcagGTTGCAATAGACACAGCGGCACCACTTGAGAATGATTCAGCTGCTGGTGGGTACATTGATCCAATGGATCTTTACGGAGCTTATGGTTCAATGAGATCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC