1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtgtaatactaacatacgtgctattatgcattttctcattactcaaccatcgaacttgttttgatggaccattttaattgcttactcagGGAGCCCTGGAGACGACCCTCTTTTGCCAGTATCATGGAATCCCTGAAACTTCTCATCAAGACATTACCACCCAATCAGCTCCTCGAAGAAAATTAGTTA
species | Zea mays |
transcript | GRMZM2G059671_T01 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: AGCAGCGTTGATCCGAAAGTGGCGGCAGTAATCGAGTCCTGCTGGGTCAG GGAGCCCTGGAGACGACCCTCTTTTGCCAGTATCATGGAATCCCTGAAACTEST: gi|19822326|gb|BQ048350.1|BQ048350
genomic: AGCAGCGTTGATCCGAAAGTGGCGGCAGTAATCGAGTCCTGCTGGGTCAGgtgtaatact ... gcttactcagGGAGCCCTGGAGACGACCCTCTTTTGCCAGTATCATGGAATCCCTGAAACT
EST: AGCAGCGTTGATCCGAAAGTGGCGGCAGTAATCGAGTCCTGCTGGGTCAG GGAGCCCTGGAGACGACCCTCTTTTGCCAGTATCATGGAATCCCTGAAACTEST: gi|76284240|gb|DV023808.1|DV023808
genomic: AGCAGCGTTGATCCGAAAGTGGCGGCAGTAATCGAGTCCTGCTGGGTCAGgtgtaatact ... gcttactcagGGAGCCCTGGAGACGACCCTCTTTTGCCAGTATCATGGAATCCCTGAAACT
EST: AGCAGCGTTGATCCGAAAGTGGCGGCAGTAATCGAGTCCTGCTGGGTCAG GGAGCCCTGGAGACGACCCTCTTTTGCCAGTATCATGGAATCCCTGAAACTEST: gi|26456039|gb|CA827622.1|CA827622
genomic: AGCAGCGTTGATCCGAAAGTGGCGGCAGTAATCGAGTCCTGCTGGGTCAGgtgtaatact ... gcttactcagGGAGCCCTGGAGACGACCCTCTTTTGCCAGTATCATGGAATCCCTGAAACT
EST: AGCAGCGTTGATCCGAAAGTGGCGGCAGTAATCGAGTCCTGCTGGGTCAG GGAGCCCTGGAGACGACCCTCTTTTGCCAGTATCATGGAATCCCTGAAACTEST: gi|67042437|gb|CO468692.1|CO468692
genomic: AGCAGCGTTGATCCGAAAGTGGCGGCAGTAATCGAGTCCTGCTGGGTCAGgtgtaatact ... gcttactcagGGAGCCCTGGAGACGACCCTCTTTTGCCAGTATCATGGAATCCCTGAAACT
EST: AGCAGCGTTGATCCGAAAGTGGCGGCAGTAATCGAGTCCTGCTGGGTCAG GGAGCCCTGGAGACGACCCTCTTTTGTCAGTATCATGGAATCCCTGAAACTEST: gi|149096725|gb|EE182499.2|EE182499
genomic: AGCAGCGTTGATCCGAAAGTGGCGGCAGTAATCGAGTCCTGCTGGGTCAGgtgtaatact ... gcttactcagGGAGCCCTGGAGACGACCCTCTTTTGCCAGTATCATGGAATCCCTGAAACT
EST: AGCAGCGTTGATCCGAAAGTGGCGGCAGTAATCGAGTCCTGCTGGGTCAG GGAGCCCTGGAGACGACCCTCTTTTGCCAGTATCATGGAATCCCTGAAACTEST: gi|113703759|gb|EE681263.1|EE681263
genomic: AGCAGCGTTGATCCGAAAGTGGCGGCAGTAATCGAGTCCTGCTGGGTCAGgtgtaatact ... gcttactcagGGAGCCCTGGAGACGACCCTCTTTTGCCAGTATCATGGAATCCCTGAAACT
EST: AGCAGCGTTGATCCGAAAGTGGCGGCAGTAATCGAGTCCTGCTGGGTCAG GGAGCCCTGGAGACGACCCTCTTTTGTCAGTATCATGGAATCCCTGAAACTEST: gi|88757722|gb|DY541863.1|DY541863
genomic: AGCAGCGTTGATCCGAAAGTGGCGGCAGTAATCGAGTCCTGCTGGGTCAGgtgtaatact ... gcttactcagGGAGCCCTGGAGACGACCCTCTTTTGCCAGTATCATGGAATCCCTGAAACT
EST: AGCAGCGTTGATCCGAAAGTGGCGGCAGTAATCGAGTCCTGCTGGGTCAG GGAGCCCTGGAGACGACCCTCTTTTGCCAGTATCATGGAATCCCTGAAACTEST: gi|20336958|gb|BQ172588.1|BQ172588
genomic: AGCAGCGTTGATCCGAAAGTGGCGGCAGTAATCGAGTCCTGCTGGGTCAGgtgtaatact ... gcttactcagGGAGCCCTGGAGACGACCCTCTTTTGCCAGTATCATGGAATCCCTGAAACT
EST: AGCAGCGTTGATCCGAAAGTGGCGGCAGTAATCGAGTCCTGCTGGGTCAG GGAGCCCTGGAGACGACCCTCTTTTGCCAGTATCATGGAATCCCTGAAACTEST: gi|78110653|gb|DV529058.1|DV529058
genomic: AGCAGCGTTGATCCGAAAGTGGCGGCAGTAATCGAGTCCTGCTGGGTCAGgtgtaatact ... gcttactcagGGAGCCCTGGAGACGACCCTCTTTTGCCAGTATCATGGAATCCCTGAAACT
EST: AGCAGCGTTGATCCGAAAGTGGCGGCAGTAATCGAGTCCTGCTGGGTCAG GGAGCCCTGGAGACGACCCTCTTTTGCCAGTATCATGGAATCCCTGAAACTEST: gi|60358265|gb|DN225238.1|DN225238
genomic: AGCAGCGTTGATCCGAAAGTGGCGGCAGTAATCGAGTCCTGCTGGGTCAGgtgtaatact ... gcttactcagGGAGCCCTGGAGACGACCCTCTTTTGCCAGTATCATGGAATCCCTGAAACT
EST: AGCAGCGTTGATCCGAAAGTGGCGGCAGTAATCGAGTCCTGCTGGGTCAG GGAGCCCTGGAGACGACCCTCTTTTGCCAGTATCATGGAATCCCTGAAACTEST: gi|60357002|gb|DN223975.1|DN223975
genomic: AGCAGCGTTGATCCGAAAGTGGCGGCAGTAATCGAGTCCTGCTGGGTCAGgtgtaatact ... gcttactcagGGAGCCCTGGAGACGACCCTCTTTTGCCAGTATCATGGAATCCCTGAAACT
EST: AGCAGCGTTGATCCGAAAGTGGCGGCAGTAATCGAGTCCTGCTGGGTCAG GGAGCCCTGGAGACGACCCTCTTTTGCCAGTATCATGGAATCCCTGAAACTEST: gi|60337361|gb|DN204334.1|DN204334
genomic: AGCAGCGTTGATCCGAAAGTGGCGGCAGTAATCGAGTCCTGCTGGGTCAGgtgtaatact ... gcttactcagGGAGCCCTGGAGACGACCCTCTTTTGCCAGTATCATGGAATCCCTGAAACT
EST: AGCAGCGTTGATCCGAAAGTGGCGGCAGTAATCGAGTCCTGCTGGGTCAG GGAGCCCTGGAGACGACCCTCTTTTGCCAGTATCATGGAATCCCTGAAACTEST: gi|148945985|gb|EC891279.2|EC891279
genomic: AGCAGCGTTGATCCGAAAGTGGCGGCAGTAATCGAGTCCTGCTGGGTCAGgtgtaatact ... gcttactcagGGAGCCCTGGAGACGACCCTCTTTTGCCAGTATCATGGAATCCCTGAAACT
EST: AGCAGCGTTGATCCGAAAGTGGCGGCAGTAATCGAGTCCTGCTGGGTCAG GGAGCCCTGGAGACGACCCTCTTTTGCCAGTATCATGGAATCCCTGAAACTEST: gi|211160526|gb|FL223272.1|FL223272
genomic: AGCAGCGTTGATCCGAAAGTGGCGGCAGTAATCGAGTCCTGCTGGGTCAGgtgtaatact ... gcttactcagGGAGCCCTGGAGACGACCCTCTTTTGCCAGTATCATGGAATCCCTGAAACT
EST: AGCAGCGTTGATCCGAAAGTGGCGGCAGTAATCGAGTCCTGCTGGGTCAG GGAGCCCTGGAGACGACCCTCTTTTGCCAGTATCATGGAATCCCTGAAACTEST: gi|19770367|gb|BQ035088.1|BQ035088
genomic: AGCAGCGTTGATCCGAAAGTGGCGGCAGTAATCGAGTCCTGCTGGGTCAGgtgtaatact ... gcttactcagGGAGCCCTGGAGACGACCCTCTTTTGCCAGTATCATGGAATCCCTGAAACT
EST: AGCAGCGTTGATCCGAAAGTGGCGGCAGTAATCGAGTCCTGCTGGGTCAG GGAGCCCTGGAGACGACCCTCTTTTGCCAGTATCATGGAATCCCTGAAACTEST: gi|78544160|gb|DV621658.1|DV621658
genomic: AGCAGCGTTGATCCGAAAGTGGCGGCAGTAATCGAGTCCTGCTGGGTCAGgtgtaatact ... gcttactcagGGAGCCCTGGAGACGACCCTCTTTTGCCAGTATCATGGAATCCCTGAAACT
EST: AGCAGCGTTGATCCGAAAGTGGCGGCAGTAATCGAGTCCTGCTGGGTCAG GGAGCCCTGGAGACGACCCTCTTTTGCCAGTATCATGGAATCCCTGAAACTEST: gi|78544345|gb|DV621843.1|DV621843
genomic: AGCAGCGTTGATCCGAAAGTGGCGGCAGTAATCGAGTCCTGCTGGGTCAGgtgtaatact ... gcttactcagGGAGCCCTGGAGACGACCCTCTTTTGCCAGTATCATGGAATCCCTGAAACT
EST: AGCAGCGTTGATCCGAAAGTGGCGGCAGTAATCGAGTCCTGCTGGGTCAG GGAGCCCTGGAGACGACCCTCTTTTGCCAGTATCATGGAATCCCTGAAACT
genomic: AGCAGCGTTGATCCGAAAGTGGCGGCAGTAATCGAGTCCTGCTGGGTCAGgtgtaatact ... gcttactcagGGAGCCCTGGAGACGACCCTCTTTTGCCAGTATCATGGAATCCCTGAAACT
ctcattactcaaccatcgaacttgttttgatggaccattttaattgcttactcagGGAGCCCTGGAGACGACCCTCTTTTGCCAGTATCATGGAATCCCTGAAACTTCTCATCAAGACATTACCACCCAATCAGCTCCTCGAAGAAAATTAGTTA
tgcttac putative branch site (score: 2)
cttactc CT-rich tract
attttaattgctta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtaatactaacatacgtgctattatgcattttctcattactcaaccatcgaacttgttttgatggaccattttaattgcttactcagGGAGCCCTGGAGACGACCCTCTTTTGCCAGTATCATGGAATCCCTGAAACTTCTCATCAAGACATTACCACCCAATCAGCTCCTCGAAGAAAATTAGTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA