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gtaatcaaaccaaaccgccagcatattaagaatttaactcatgatgaattgtgtgaatgaattcactatgcaatctttatcttcaatcccttcagGAGAAGCTGAAGTGTGAGAAAGGAGAAACTCCGTCGGATCCTCCGAAGAAGGAAAAGGAGGAGACCATCATTCTAAGGCCGCTGAACATGACAGATCTGA
species | Zea mays |
transcript | GRMZM2G058491_T01 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: CATATCGCCCTGTGAGGGAGCTAATCCAGAAGGAAAGAAAGAAGGAGCTG GAGAAGCTGAAGTGTGAGAAAGGAGAAACTCCGTCGGATCCTCCGAAGAAGEST: gi|40335664|gb|CK369734.1|CK369734
genomic: CGTATCGCCCTGTGAGAGAGCTAATCCAGAAGGAAAGAAAGAAGGAGCTGgtaatcaaac ... atcccttcagGAGAAGCTGAAGTGTGAGAAAGGAGAAACTCCGTCGGATCCTCCGAAGAAG
EST: CATATCGCCCTGTGAGGGAGCTAATCCAGAAGGAAAGAAAGAAGGAGCTG GAGAAGCTGAAGTGTGAGAAAGGAGAAACTCCGTCGGATCCTCCGAAGAAGEST: gi|94477011|gb|EB705969.1|EB705969
genomic: CGTATCGCCCTGTGAGAGAGCTAATCCAGAAGGAAAGAAAGAAGGAGCTGgtaatcaaac ... atcccttcagGAGAAGCTGAAGTGTGAGAAAGGAGAAACTCCGTCGGATCCTCCGAAGAAG
EST: GGTATCGCCCTGTGAGAGAGTTAATCCAGAAGGAAAGAAAGAAGGAGCTG GAGAAGCTGAAGTGTGAGAAAGGAGAAACTCCGTCGGATCCTCCGAAGAAGEST: gi|37384938|gb|CF629576.1|CF629576
genomic: CGTATCGCCCTGTGAGAGAGCTAATCCAGAAGGAAAGAAAGAAGGAGCTGgtaatcaaac ... atcccttcagGAGAAGCTGAAGTGTGAGAAAGGAGAAACTCCGTCGGATCCTCCGAAGAAG
EST: CATATCGCCCTGTGAGGGAGCTAATCCAGAAGGAAAGAAAGAAGGAGCTG GAGAAGCTGAAGTGTGAGAAAGGAGAAACTCCGTCGGATCCTCCGAAGAAG
genomic: CGTATCGCCCTGTGAGAGAGCTAATCCAGAAGGAAAGAAAGAAGGAGCTGgtaatcaaac ... atcccttcagGAGAAGCTGAAGTGTGAGAAAGGAGAAACTCCGTCGGATCCTCCGAAGAAG
atgatgaattgtgtgaatgaattcactatgcaatctttatcttcaatcccttcagGAGAAGCTGAAGTGTGAGAAAGGAGAAACTCCGTCGGATCCTCCGAAGAAGGAAAAGGAGGAGACCATCATTCTAAGGCCGCTGAACATGACAGATCTGA
tcttcaatcccttc CT-rich tract
aatctttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatcaaaccaaaccgccagcatattaagaatttaactcatgatgaattgtgtgaatgaattcactatgcaatctttatcttcaatcccttcagGAGAAGCTGAAGTGTGAGAAAGGAGAAACTCCGTCGGATCCTCCGAAGAAGGAAAAGGAGGAGACCATCATTCTAAGGCCGCTGAACATGACAGATCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA