1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...ttgtttgggattcaaacccatccaatcccactcaatccacatggattgagagctaaccgaacaagccctaagactgcatgctctttgttcgctttgacagCAACCGGGTTCTGGATCTGATCGCCCACATGGCTCTCGTCAGTGCCGCCGCCAAGCTCTGATGTCCGTACTCGTTTCTCCAGTAGTAGCTTAGAAAAAAA
species | Zea mays |
transcript | GRMZM2G051004_T01 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: TCTTCTTTCATGAAGCTTGTGTCTTGGTATGACAACGAGTGGGGCTACAG CAACCGGGTTCTGGATCTGATCGCCCACATGGCTCTCGTCAGTGCCGCCGCEST: gi|211407297|gb|FL458695.1|FL458695
genomic: TCTTCTTTCATGAAGCTTGTGTCTTGGTATGACAACGAGTGGGGCTACAGgtaagagttt ... gctttgacagCAACCGGGTTCTGGATCTGATCGCCCACATGGCTCTCGTCAGTGCCGCCGC
EST: TCTTCTTTCATGAAGCTTGTGTCTTGGTATGACAACGAGTGGGGCTACAG CAACCGGGTTCTGGATCTGATCGCCCACATGGCTCTCGTCAGTGCCGCCGCEST: gi|148928089|gb|EC872534.2|EC872534
genomic: TCTTCTTTCATGAAGCTTGTGTCTTGGTATGACAACGAGTGGGGCTACAGgtaagagttt ... gctttgacagCAACCGGGTTCTGGATCTGATCGCCCACATGGCTCTCGTCAGTGCCGCCGC
EST: TCTTCTTTCATGAAGCTTGTGTCTTGGTATGACAACGAGTGGGGCTACAG CAACCGGGTTCTGGATCTGATCGCCCACATGGCTCTCGTCAGTGCCGCCGCEST: gi|37397668|gb|CF636141.1|CF636141
genomic: TCTTCTTTCATGAAGCTTGTGTCTTGGTATGACAACGAGTGGGGCTACAGgtaagagttt ... gctttgacagCAACCGGGTTCTGGATCTGATCGCCCACATGGCTCTCGTCAGTGCCGCCGC
EST: TCTTCTTTCATGAAGCTTGTGTCTTGGTATGACAACGAGTGGGGCTACAG CAACCGGGTTCTGGATCTGATCGCCCACATGGCTCTCGTCAGTGCCGCCGCEST: gi|166452788|gb|EG181214.1|EG181214
genomic: TCTTCTTTCATGAAGCTTGTGTCTTGGTATGACAACGAGTGGGGCTACAGgtaagagttt ... gctttgacagCAACCGGGTTCTGGATCTGATCGCCCACATGGCTCTCGTCAGTGCCGCCGC
EST: TCTTCTTTCATGAAGCTTGTGTCTTGGTATGACAACGAGTGGGGCTACAG CAACCGGGTTCTGGATCTGAT-GCCCACATGGCTCEST: gi|67025324|gb|CO454073.1|CO454073
genomic: TCTTCTTTCATGAAGCTTGTGTCTTGGTATGACAACGAGTGGGGCTACAGgtaagagttt ... gctttgacagCAACCGGGTTCTGGATCTGATCGCCCACATGGCTC
EST: TCTTCTTTCATGAAGCTCGTGTCTTGGTATGACAACGAGTGGGGCTACAG CAACCGGGTTCTGGATCTGATCGCCCACATGGCCCTCGTCAGCGCCGCCGCEST: gi|40337147|gb|CK371217.1|CK371217
genomic: TCTTCTTTCATGAAGCTTGTGTCTTGGTATGACAACGAGTGGGGCTACAGgtaagagttt ... gctttgacagCAACCGGGTTCTGGATCTGATCGCCCACATGGCTCTCGTCAGTGCCGCCGC
EST: TCTTCTTTCATGAAGCTTGTGTCTTGGTATGACAACGAGTGGGGCTACAG CAACCGGGTTCTGGATCTGATCGCCCACATGGCTCTCGTCAGTGCCGCCGCEST: gi|84977532|gb|DW475954.1|DW475954
genomic: TCTTCTTTCATGAAGCTTGTGTCTTGGTATGACAACGAGTGGGGCTACAGgtaagagttt ... gctttgacagCAACCGGGTTCTGGATCTGATCGCCCACATGGCTCTCGTCAGTGCCGCCGC
EST: TCTTCTTTCATGAAGCTTGTGTCTTGGTATGACAACGAGTGGGGCTACAG CAACCGGGTTCTGGATCTGATCGCCCACATGGCTCTCGTCAGTGCCGCCGCEST: gi|30306629|gb|CD001302.1|CD001302
genomic: TCTTCTTTCATGAAGCTTGTGTCTTGGTATGACAACGAGTGGGGCTACAGgtaagagttt ... gctttgacagCAACCGGGTTCTGGATCTGATCGCCCACATGGCTCTCGTCAGTGCCGCCGC
EST: TCTTCTTTCATGAAGCTTGTGTCTTGGTATGACAACGAGTGGGGCTACAG CAACCGGGTTCTGGATCTGATCGCCCACATGGCTCTCGTCAGTGCCGCCGCEST: gi|31997624|gb|CD661686.1|CD661686
genomic: TCTTCTTTCATGAAGCTTGTGTCTTGGTATGACAACGAGTGGGGCTACAGgtaagagttt ... gctttgacagCAACCGGGTTCTGGATCTGATCGCCCACATGGCTCTCGTCAGTGCCGCCGC
EST: TCTTCTTTCATGAAGCTTGTGTCTTGGTATGACAACGAGTGGGGCTACAG CAACCGGGTTCTGGATCTGATCGCCCACATGGCTCTCGTCAGTGCCGCCGCEST: gi|148944446|gb|EC889561.2|EC889561
genomic: TCTTCTTTCATGAAGCTTGTGTCTTGGTATGACAACGAGTGGGGCTACAGgtaagagttt ... gctttgacagCAACCGGGTTCTGGATCTGATCGCCCACATGGCTCTCGTCAGTGCCGCCGC
EST: TCTTCTTTCATGAAGCTTGTGTCTTGGTATGACAACGAGTGGGGCTACAG CAACCGGGTTCTGGATCTGATCGCCCACATGGCTCTCGTCAGTGCCGCCGCEST: gi|6021812|gb|AW066740.1|AW066740
genomic: TCTTCTTTCATGAAGCTTGTGTCTTGGTATGACAACGAGTGGGGCTACAGgtaagagttt ... gctttgacagCAACCGGGTTCTGGATCTGATCGCCCACATGGCTCTCGTCAGTGCCGCCGC
EST: TCTTCTTTCATGAAGCTTGTGTCTTGGTATGACAACGAGTGGGGCTACAG CAACCGGGTTCTGGATCTGATCGCCCACATGGCTCTCGTCAGTGCCGCCGC
genomic: TCTTCTTTCATGAAGCTTGTGTCTTGGTATGACAACGAGTGGGGCTACAGgtaagagttt ... gctttgacagCAACCGGGTTCTGGATCTGATCGCCCACATGGCTCTCGTCAGTGCCGCCGC
ttgagagctaaccgaacaagccctaagactgcatgctctttgttcgctttgacagCAACCGGGTTCTGGATCTGATCGCCCACATGGCTCTCGTCAGTGCCGCCGCCAAGCTCTGATGTCCGTACTCGTTTCTCCAGTAGTAGCTTAGAAAAAAA
agctaac putative branch site (score: 114)
ctctttgttcgcttt putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgtttgggattcaaacccatccaatcccactcaatccacatggattgagagctaaccgaacaagccctaagactgcatgctctttgttcgctttgacagCAACCGGGTTCTGGATCTGATCGCCCACATGGCTCTCGTCAGTGCCGCCGCCAAGCTCTGATGTCCGTACTCGTTTCTCCAGTAGTAGCTTAGAAAAAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
ttgtttg
- - - - - - - - - catccaa
- - - - - - - - - - - - - -ccactca
- - - - - - - - - - - - - - - - - - -cacatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caagccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gactgca