1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
...caggaccgtggaactaaaactgttttttaaacgtattaatgaactatggtttttatcatttcattaactcctttggtacatcctttctcctccttaacagAGTTTCCTTGCAAGAAAATCATTGGATTCTCAATTGCAGCTGATGGGAGCATTATTGTCATCTGAAAGCATTTCTCTCTCTGATAACATTCATGATACAT
species | Zea mays |
transcript | GRMZM2G047894_T03 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: TAGTTAGGTCCAATTGCATTGATTGCCTGGACCGTACAAATGTGACACAG AGTTTCCTTGCAAGAAAATCATTGGATTCTCAATTGCAGCTGATGGGAGCAEST: gi|71311517|gb|DR792122.1|DR792122
genomic: TAGTTAGGTCCAATTGCATTGATTGCCTGGACCGTACAAATGTGACACAGgtttgtacgt ... tccttaacagAGTTTCCTTGCAAGAAAATCATTGGATTCTCAATTGCAGCTGATGGGAGCA
EST: TAGTTAGGTCCAATTGCATTGATTGCCTGGACCGTACAAATGTGACACAG AGTTTCCTTGCAAGAAAATCATTGGATTCTCAATTGCAGCTGATGGGAGCAEST: gi|32934739|gb|CF039551.1|CF039551
genomic: TAGTTAGGTCCAATTGCATTGATTGCCTGGACCGTACAAATGTGACACAGgtttgtacgt ... tccttaacagAGTTTCCTTGCAAGAAAATCATTGGATTCTCAATTGCAGCTGATGGGAGCA
EST: GTACAAATGTGACACAG AGTTTCTTTGCAAGAAAATCATTGGATTCTCAATTGCAGCTGATGGGAGCAEST: gi|40335862|gb|CK369932.1|CK369932
genomic: GTACAAATGTGACACAGgtttgtacgt ... tccttaacagAGTTTCCTTGCAAGAAAATCATTGGATTCTCAATTGCAGCTGATGGGAGCA
EST: TAGTTAGGTCCAATTGCATTGATTGCCTGGACCGTACAAATGTGACACAG AGTTTCCTTGCAAGAAAATCATTGGATTCTCAATTGCAGCTGATGGGAGCAEST: gi|71325384|gb|DR799369.1|DR799369
genomic: TAGTTAGGTCCAATTGCATTGATTGCCTGGACCGTACAAATGTGACACAGgtttgtacgt ... tccttaacagAGTTTCCTTGCAAGAAAATCATTGGATTCTCAATTGCAGCTGATGGGAGCA
EST: AGTTAGGTCCAATTGCATTGATTGCCTGGACCGTACAAATGTGACACAG AGTTTCCTTGCAAGAAAATCATAGGATTCTCAATTGCAGCTGATGGGAGCAEST: gi|5296286|gb|AI783056.1|AI783056
genomic: AGTTAGGTCCAATTGCATTGATTGCCTGGACCGTACAAATGTGACACAGgtttgtacgt ... tccttaacagAGTTTCCTTGCAAGAAAATCATTGGATTCTCAATTGCAGCTGATGGGAGCA
EST: TAGTTAGGTCCAATTGCATTGATTGCCTGGACCGTACAAATGTGACACAG AGTTTCCTTGCAAGAAAATCATTGGATTCTCAATTGCAGCTGATGGGAGCAEST: gi|5846902|gb|AI999985.1|AI999985
genomic: TAGTTAGGTCCAATTGCATTGATTGCCTGGACCGTACAAATGTGACACAGgtttgtacgt ... tccttaacagAGTTTCCTTGCAAGAAAATCATTGGATTCTCAATTGCAGCTGATGGGAGCA
EST: TAGTTAGGTCCAATTGCATTGATTGCCTGGACCGTACAAATGTGACACAG AGTTTCCTTGCAAGAAAATCATTGGATTCTCAATTGCAGCTGATGGGAGCAEST: gi|32850672|gb|CD990353.1|CD990353
genomic: TAGTTAGGTCCAATTGCATTGATTGCCTGGACCGTACAAATGTGACACAGgtttgtacgt ... tccttaacagAGTTTCCTTGCAAGAAAATCATTGGATTCTCAATTGCAGCTGATGGGAGCA
EST: ACAAATGTGACACAG AGTTTCTTTGCAAGAAAATCATTGGATTCTCAATTGCAGCTGATGGGAGCAEST: gi|60343346|gb|DN210319.1|DN210319
genomic: ACAAATGTGACACAGgtttgtacgt ... tccttaacagAGTTTCCTTGCAAGAAAATCATTGGATTCTCAATTGCAGCTGATGGGAGCA
EST: TAGTTAGGTCCAATTGCATTGATTGCCTGGACCGTACAAATGTGACACAG AGTTTCCTTGCAAGAAAATCATTGGATTCTCAATTGCAGCTGATGGGAGCA
genomic: TAGTTAGGTCCAATTGCATTGATTGCCTGGACCGTACAAATGTGACACAGgtttgtacgt ... tccttaacagAGTTTCCTTGCAAGAAAATCATTGGATTCTCAATTGCAGCTGATGGGAGCA
atggtttttatcatttcattaactcctttggtacatcctttctcctccttaacagAGTTTCCTTGCAAGAAAATCATTGGATTCTCAATTGCAGCTGATGGGAGCATTATTGTCATCTGAAAGCATTTCTCTCTCTGATAACATTCATGATACAT
cattaac putative branch site (score: 2)
ctcctttggtacatcc CT-rich tract
ttttatcatttcatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caggaccgtggaactaaaactgttttttaaacgtattaatgaactatggtttttatcatttcattaactcctttggtacatcctttctcctccttaacagAGTTTCCTTGCAAGAAAATCATTGGATTCTCAATTGCAGCTGATGGGAGCATTATTGTCATCTGAAAGCATTTCTCTCTCTGATAACATTCATGATACAT
caggacc
- - - - - -aactaaa
- - - - - - - - - actgttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttcatt