1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtaattaagcgctcgtagtgagcttgtatatgcatgtatatcgtttctctggtgacgcttttgctttgcttccactcctactcgtagGCGTCGAAGTTTCTCCGCTCTCCTCCTACGCCGGAGAGAACCTGGAAGCCATCTGCCGTGGGCGAACGTTCCATGCGCCGAGCGAGATCTCGTTTTAGGA
species | Zea mays |
transcript | GRMZM2G044629_T03 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: AGTCGCTGCTGGCGGCTTCTTGACGCACTCTGTGCCCTTGTATATGACAG GCGTCGAAGTTTTTCCGCTCTCCTCCTACGCCGGAGAGAACCTGGAAGCCAEST: gi|71429564|gb|DR810614.1|DR810614
genomic: AGTCGCTGCTGGCGGCTTCTTGACGCACTCTGTGCCCTTGTATATGACAGgtaattaagc ... ctactcgtagGCGTCGAAGTTTCTCCGCTCTCCTCCTACGCCGGAGAGAACCTGGAAGCCA
EST: AGTCGCTGCTGGCGGCTTCTTGACGCACTCTGTGCCCTTGTATATGACAG GCGTCGAAGTTTCTCCGCTCTCCTCCTACGCCGGAGAGAACCTGGAAGCCAEST: gi|211094109|gb|FL460556.1|FL460556
genomic: AGTCGCTGCTGGCGGCTTCTTGACGCACTCTGTGCCCTTGTATATGACAGgtaattaagc ... ctactcgtagGCGTCGAAGTTTCTCCGCTCTCCTCCTACGCCGGAGAGAACCTGGAAGCCA
EST: AGTCGCTGCTGGCGGCTTCTTGACGCACTCTGTGCCCTTGTATATGACAG GCGTCGAAGTTTCTCCGCTCTCCTCCTACGCCGGAGAGAACCTGGAAGCCAEST: gi|37378055|gb|CF625683.1|CF625683
genomic: AGTCGCTGCTGGCGGCTTCTTGACGCACTCTGTGCCCTTGTATATGACAGgtaattaagc ... ctactcgtagGCGTCGAAGTTTCTCCGCTCTCCTCCTACGCCGGAGAGAACCTGGAAGCCA
EST: AGTCGCTGCTGGCGGCTTCTTGACGCACTCTGTGCCCTTGTATATGACAG GCGTCGAAGTTTCTCCGCTCTCCTCCTACGCCGGAGAGAACCTGGAAGCCAEST: gi|211406602|gb|FL094198.1|FL094198
genomic: AGTCGCTGCTGGCGGCTTCTTGACGCACTCTGTGCCCTTGTATATGACAGgtaattaagc ... ctactcgtagGCGTCGAAGTTTCTCCGCTCTCCTCCTACGCCGGAGAGAACCTGGAAGCCA
EST: AGTCGCTGCTGGCGGCTTCTTGACGCACTCTGTGCCCTTGTATATGACAG GCCGTCGAAGTTTCTCCGGCTCTCCTCCTACGCCGGGAGAGAACCCTGGAAEST: gi|78115802|gb|DV534190.1|DV534190
genomic: AGTCGCTGCTGGCGGCTTCTTGACGCACTCTGTGCCCTTGTATATGACAGgtaattaagc ... ctactcgtagGC-GTCGAAGTTTCTCCG-CTCTCCTCCTACGCCGG-AGAGAACC-TGGAA
EST: AGTCGCTGCTGGCGGCTTCTTGACGCACTCTGTGCCCTTGTATATGACAG GCGTCGAAGTTTCTCCGCTCTCCTCCTACGCCGGAGAGAACCTGGAAGCCAEST: gi|37376092|gb|CF624546.1|CF624546
genomic: AGTCGCTGCTGGCGGCTTCTTGACGCACTCTGTGCCCTTGTATATGACAGgtaattaagc ... ctactcgtagGCGTCGAAGTTTCTCCGCTCTCCTCCTACGCCGGAGAGAACCTGGAAGCCA
EST: AGTCGCTGCTGGCGGCTTCTTGACGCACTCTGTGCCCTTGTATATGACAG GCGTCGAAGTTTCTCCGCTCTCCTCCTACGCCGGAGAGAACCTGGAAGCCAEST: gi|149014876|gb|EE044587.2|EE044587
genomic: AGTCGCTGCTGGCGGCTTCTTGACGCACTCTGTGCCCTTGTATATGACAGgtaattaagc ... ctactcgtagGCGTCGAAGTTTCTCCGCTCTCCTCCTACGCCGGAGAGAACCTGGAAGCCA
EST: AGTCGTTGCTGGCGGCTTCTTGACGCACTCTGTGCCCTTGTATATGACAG GCGTGGAAGTTTCTCCGCTCTCCTCTTACGCCGGAGAGAACCTGGAAGCCAEST: gi|94477176|gb|EB706134.1|EB706134
genomic: AGTCGCTGCTGGCGGCTTCTTGACGCACTCTGTGCCCTTGTATATGACAGgtaattaagc ... ctactcgtagGCGTCGAAGTTTCTCCGCTCTCCTCCTACGCCGGAGAGAACCTGGAAGCCA
EST: AGTCGCTGCTGGCGGCTTCTTGACGCACTCTGTGCCCTTGTATATGACAG GCGTGGAAGTTTTTCCGCTCTCCTCCTACGCCGGAGAGAACCTGGAAGCCAEST: gi|211119106|gb|FL479441.1|FL479441
genomic: AGTCGCTGCTGGCGGCTTCTTGACGCACTCTGTGCCCTTGTATATGACAGgtaattaagc ... ctactcgtagGCGTCGAAGTTTCTCCGCTCTCCTCCTACGCCGGAGAGAACCTGGAAGCCA
EST: CTCTGTCCCCTTGTATATGACAG GCGTCGAAGTTTCTCCGCTCTCCTCCTACGCCGGAGAGAACCTGGAAGCCAEST: gi|211119105|gb|FL479440.1|FL479440
genomic: CTCTGTGCCCTTGTATATGACAGgtaattaagc ... ctactcgtagGCGTCGAAGTTTCTCCGCTCTCCTCCTACGCCGGAGAGAACCTGGAAGCCA
EST: AGTCGCTGCTGGCGGCTTCTTGACGCACTCTGTGCCCTTGTATATGACAG GCGTCGAAGTTTCTCCGCTCTCCTCCTACGCCGGAGAGAACCTGGAAGCCAEST: gi|16926727|gb|BM079795.1|BM079795
genomic: AGTCGCTGCTGGCGGCTTCTTGACGCACTCTGTGCCCTTGTATATGACAGgtaattaagc ... ctactcgtagGCGTCGAAGTTTCTCCGCTCTCCTCCTACGCCGGAGAGAACCTGGAAGCCA
EST: AGTCGCTGCTGGCGGCTTCTTGACGCACTCTGTGCCCTTGTATATGACAG GCGTCGAAGTTTCTCCGCTCTCCTCCTACGCCGGAGAGAACCTGGAAGCCAEST: gi|91052248|gb|EB162666.1|EB162666
genomic: AGTCGCTGCTGGCGGCTTCTTGACGCACTCTGTGCCCTTGTATATGACAGgtaattaagc ... ctactcgtagGCGTCGAAGTTTCTCCGCTCTCCTCCTACGCCGGAGAGAACCTGGAAGCCA
EST: AGTCGCTGCTGGCGGCTTCTTGACGCACTCTGTGCCCTTGTATATGACAG GCGTCGAAGTTTTTCCGCTCTCCTCCTACGCCGGAGAGAACCTGGAAGCCAEST: gi|24769018|gb|CA404147.1|CA404147
genomic: AGTCGCTGCTGGCGGCTTCTTGACGCACTCTGTGCCCTTGTATATGACAGgtaattaagc ... ctactcgtagGCGTCGAAGTTTCTCCGCTCTCCTCCTACGCCGGAGAGAACCTGGAAGCCA
EST: AGTCGCTGCTGGCGGCTTCTTGACGCACTCTGTGCCCTTGTATATGACAG GCGTCGAAGTTTCTCCGCTCTCCTCCTACGCCGGAGAGAACCTGGAAGCCAEST: gi|16926697|gb|BM079765.1|BM079765
genomic: AGTCGCTGCTGGCGGCTTCTTGACGCACTCTGTGCCCTTGTATATGACAGgtaattaagc ... ctactcgtagGCGTCGAAGTTTCTCCGCTCTCCTCCTACGCCGGAGAGAACCTGGAAGCCA
EST: AGTCGCTGCTGGCGGCTTCTTGACGCACTCTGTGCCCTTGTATATGACAG GCGTCGAAGTTTCTCCGCTCTCCTCCTACGCCGGAGAGAACCTGGAAGCCAEST: gi|14244148|gb|BG841843.2|BG841843
genomic: AGTCGCTGCTGGCGGCTTCTTGACGCACTCTGTGCCCTTGTATATGACAGgtaattaagc ... ctactcgtagGCGTCGAAGTTTCTCCGCTCTCCTCCTACGCCGGAGAGAACCTGGAAGCCA
EST: AGTCGCTGCTGGCGGCTTCTTGACGCACTCTGTGCCCTTGTATATGACAG GCGTCGAAGTTTCTCCGCTCTCCTCCTACGCCGGAGAGAACCTGGAAGCCAEST: gi|4225561|gb|AI396014.1|AI396014
genomic: AGTCGCTGCTGGCGGCTTCTTGACGCACTCTGTGCCCTTGTATATGACAGgtaattaagc ... ctactcgtagGCGTCGAAGTTTCTCCGCTCTCCTCCTACGCCGGAGAGAACCTGGAAGCCA
EST: AGTCGCTGCTGGCGGCTTCTTGACGCACTCTGTGCCCTTGTATATGACAG GCGTCGAAGTTTCTCCGCTCTCCTCCTACGCCGGAGAGAACCTGGAAGCCA
genomic: AGTCGCTGCTGGCGGCTTCTTGACGCACTCTGTGCCCTTGTATATGACAGgtaattaagc ... ctactcgtagGCGTCGAAGTTTCTCCGCTCTCCTCCTACGCCGGAGAGAACCTGGAAGCCA
catgtatatcgtttctctggtgacgcttttgctttgcttccactcctactcgtagGCGTCGAAGTTTCTCCGCTCTCCTCCTACGCCGGAGAGAACCTGGAAGCCATCTGCCGTGGGCGAACGTTCCATGCGCCGAGCGAGATCTCGTTTTAGGA
cttttgctttgcttcc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattaagcgctcgtagtgagcttgtatatgcatgtatatcgtttctctggtgacgcttttgctttgcttccactcctactcgtagGCGTCGAAGTTTCTCCGCTCTCCTCCTACGCCGGAGAGAACCTGGAAGCCATCTGCCGTGGGCGAACGTTCCATGCGCCGAGCGAGATCTCGTTTTAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC