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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttgatagtttatctagcaatttctgcaattcaatagtatcagccaaagcagtcttcttttcatccatcccccagaaggccagaatgattatattttttgtgacagGCCGCTATATTTGGAAGAGACCCAAATTGGGGACGAATTGCTTGCTCAGTTGGTTATTCAGGCATTCAATTTGACGCAAATCGACTTGATATTTCTCTGG

Basic information

species Zea mays
transcript GRMZM2G044237_T03
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G044237_T03 (Zea mays), 3'ss of exon 13
lower sequence: LOC_Os03g17120.1 (Oryza sativa), 3'ss of exon 13
gtatgttgatagtttatctagcaatttctgcaattcaatagtatcagccaaagcagtcttcttttcatccatcccccagaaggccagaatgattatatt-ttttgtgacagGCCGCTATATTTGGAAGAGACCCAAATTGGGGACGAATTGCTTGCTCAGTTGGTTATTCAGGCATTCAATTTGACGCAAATCGACTTGATATTTCTCTGG
||||| |  | ||||| |    || || ||| | | |  ||    ||      ||  | ||| |   ||  |  ||||||| ||| || |  ||| ||| |||| |  ||||||||| ||||||||||||||||||| |||||||| |||||||| || || ||||||||||||||||| ||||| ||  | |  ||||||||||| || |
gtatgatact-gtttagcagcaaaattttgctaattaggag----aggattgacacccctctgtcattcgttagcccagaaagcctgagttgttaaattattttttatcagGCCGCTGTATTTGGAAGAGACCCAAACTGGGGACGTATTGCTTGTTCTGTCGGTTATTCAGGCATTCAGTTTGATGCGGACCAGCTTGATATTTCCCTTG

upper sequence: GRMZM2G044237_T03 (Zea mays), 3'ss of exon 13
lower sequence: GLYMA13G19450.1 (Glycine max), 3'ss of exon 14
gtatgttgatagtttatctagcaatttctgcaattcaatagtatcagccaaagcagtcttctt--ttcatccatcccccagaaggccag--aatgattatattttttgtgacagGCCGCTATATTTGGAAGAGACCCAAATTGGGGACGAATTGCTTGCTCAGTTGGTTATTCAGGCATTCAATTTGACGCAAATCGACTTGATATTTCTCTGG
                                     ||| | | | | |||| | |||| |   ||  || ||||  |  ||| | |   |   |   || | |||    ||||| ||||||| ||| |||||||| ||||||||||| ||||||    ||| |||||| || ||  ||  |||  |   | ||  ||||    |    ||||
--------------------------------gcatgataat-tgaactaaagaaatcttttacatttttcaatccggcttaagtctaattatccaacctaatgttt-catcagGCTGCTATATATGGTAGAGACCCCAATTGGGGACGCATTGCTGCTGCAGCTGGTTACTCGGGGGTTTCATTCCATCAAGATTTACTTAGGGTAGAGCTGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32934567|gb|CF039379.1|CF039379
EST:     CAGAAGCTGCTAAAATTGCTCGTTCAGTAGCATCTTCTTCTTTGGTTAAA                         GCCGCTATATTTGGAAGAGACCCAAATTGGGGACGAATTGCTTGCTCAGTT
genomic: CAGAAGCTGCTAAAATTGCTCGTTCAGTAGCATCTTCTTCTTTGGTTAAAgtatgttgat ... tttgtgacagGCCGCTATATTTGGAAGAGACCCAAATTGGGGACGAATTGCTTGCTCAGTT
EST: gi|32835096|gb|CD974774.1|CD974774
EST:     CAGAAGCTGCTAAAATTGCTCGTTCAGTAGCATCTTCTTCTTTGGTTAAA                         GCCGCTATATTTGGAAGAGACCCAAATTGGGGACGAATTGCTTGCTCAGTT
genomic: CAGAAGCTGCTAAAATTGCTCGTTCAGTAGCATCTTCTTCTTTGGTTAAAgtatgttgat ... tttgtgacagGCCGCTATATTTGGAAGAGACCCAAATTGGGGACGAATTGCTTGCTCAGTT
EST: gi|78092274|gb|DV520648.1|DV520648
EST:     CAGAAGCTGCTAAAATTGCTCGTTCAGTAGCATCTTCTTCTTTGGTTAAA                         GCCGCTATATTTGGAAGAGACCCAAATTGGGGACGAATTGCTTGCTCAGTT
genomic: CAGAAGCTGCTAAAATTGCTCGTTCAGTAGCATCTTCTTCTTTGGTTAAAgtatgttgat ... tttgtgacagGCCGCTATATTTGGAAGAGACCCAAATTGGGGACGAATTGCTTGCTCAGTT
EST: gi|148938789|gb|EC883127.2|EC883127
EST:     CAGAAGCTGCTAAAATTGCTCGTTCAGTAGCATCTTCTTCTTTGGTTAAA                         GCCGCTATATTTGGAAGAGACCCAAATTGGGGACGAATTGCTTGCTCAGTT
genomic: CAGAAGCTGCTAAAATTGCTCGTTCAGTAGCATCTTCTTCTTTGGTTAAAgtatgttgat ... tttgtgacagGCCGCTATATTTGGAAGAGACCCAAATTGGGGACGAATTGCTTGCTCAGTT
EST: gi|32928445|gb|CF033257.1|CF033257
EST:     CAGAAGCTGCTAAAATTGCTCGTTCAGTAGCATCTTCTTCTTTGGTTAAA                         GCCGCTATATTTGGAAGAGACCCAAATTGGGAACGAATTGCTTGCTCAGTT
genomic: CAGAAGCTGCTAAAATTGCTCGTTCAGTAGCATCTTCTTCTTTGGTTAAAgtatgttgat ... tttgtgacagGCCGCTATATTTGGAAGAGACCCAAATTGGGGACGAATTGCTTGCTCAGTT
EST: gi|76917242|gb|DV166726.1|DV166726
EST:     CAGAAGCTGCTAAAATTGCTCGTTCAGTAGCATCTTCTTCTTTGGTTAAA                         GCCGCTATATTTGGAAGAGACCCAAATTGGGGACGAATTGCTTGCTCAGTT
genomic: CAGAAGCTGCTAAAATTGCTCGTTCAGTAGCATCTTCTTCTTTGGTTAAAgtatgttgat ... tttgtgacagGCCGCTATATTTGGAAGAGACCCAAATTGGGGACGAATTGCTTGCTCAGTT
EST: gi|166482515|gb|EG042058.1|EG042058
EST:     CTCGTTCAGTAGCATCTTCTTCTTTGGTTAAA                         GCCGCTATATTTGGAAGAGACCCAAATTGGGGACGAATTGCTTGCTCAGTT
genomic: CTCGTTCAGTAGCATCTTCTTCTTTGGTTAAAgtatgttgat ... tttgtgacagGCCGCTATATTTGGAAGAGACCCAAATTGGGGACGAATTGCTTGCTCAGTT
EST: gi|211349360|gb|FL434476.1|FL434476
EST:     CAGAAGCTGCTAAAATTGCTCGTTCAGTAGCATCTTCTTCTTTGGTTAAA                         GCCGCTATATTTGGAAGAGACCCAAATTGGGGACGAATTGCTTGCTCAGTT
genomic: CAGAAGCTGCTAAAATTGCTCGTTCAGTAGCATCTTCTTCTTTGGTTAAAgtatgttgat ... tttgtgacagGCCGCTATATTTGGAAGAGACCCAAATTGGGGACGAATTGCTTGCTCAGTT
EST: gi|32833027|gb|CD972705.1|CD972705
EST:     CAGAAGCTGCTAAAATTGCTCGTTCAGTAGCATCTTCTTCTTTGGTTAAA                         GCCGCTATATTTGGAAGAGACCCAAATTGGGGACGAATTG
genomic: CAGAAGCTGCTAAAATTGCTCGTTCAGTAGCATCTTCTTCTTTGGTTAAAgtatgttgat ... tttgtgacagGCCGCTATATTTGGAAGAGACCCAAATTGGGGACGAATTG
EST: gi|78027443|gb|DV495830.1|DV495830
EST:     CAGAAGCTGCTAAAATTGCTCGTTCAGTAGCATCTTCTTCTTTGGTTAAA                         GCCGCTATATTTGGAAGAGACCCAAATTGGGGACGAATTGCTTGCTCAGTT
genomic: CAGAAGCTGCTAAAATTGCTCGTTCAGTAGCATCTTCTTCTTTGGTTAAAgtatgttgat ... tttgtgacagGCCGCTATATTTGGAAGAGACCCAAATTGGGGACGAATTGCTTGCTCAGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtcttcttttcatccatcccccagaaggccagaatgattatattttttgtgacagGCCGCTATATTTGGAAGAGACCCAAATTGGGGACGAATTGCTTGCTCAGTTGGTTATTCAGGCATTCAATTTGACGCAAATCGACTTGATATTTCTCTGG
                                        tatttttt  CT-rich tract
                              agaatgattatatttt  TA-rich tract