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...tcacccgctagttcattgttaactaaacggcgacaaataaaaaagaacggagggagtactatatttcctgcaacactgtgtctgacgtgtgacatcgcagGCAACAAGGTTTGGGATACCTCCAGCCAAACACCCCCCCACCTTCATACGGCTCCGTTGGGGGTAGTAATCCATTCGGGTAAAAGAAGTGTGGGAACACC
species | Zea mays |
transcript | GRMZM2G043056_T01 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: CCGAACAGCATGCCCATGCCCGAGCAACAACCTAATAGCATGCTTGTAAC GCAACAAGGTTTGGGATACCTCCAGCCAAACANNNNNNNACCTTCATACGGEST: gi|60357017|gb|DN223990.1|DN223990
genomic: CCGAACAGCATGCCCATGCCCGAGCAACAACCTAATAGCATGCTTGTAACgtgagtaaat ... gacatcgcagGCAACAAGGTTTGGGATACCTCCAGCCAAACACCCCCCCACCTTCATACGG
EST: CCGAACAGCATGCCCATGCCCGAGCAACAACCTAATAGCATGCTTGTAAC GCAACAAGGTTTGGGATACCTCCAGCCAAACACCCC---ACCTTCATACGGEST: gi|60355844|gb|DN222817.1|DN222817
genomic: CCGAACAGCATGCCCATGCCCGAGCAACAACCTAATAGCATGCTTGTAACgtgagtaaat ... gacatcgcagGCAACAAGGTTTGGGATACCTCCAGCCAAACACCCCCCCACCTTCATACGG
EST: CCGAACAGCATGCCCATGCCCGAGCAACAACCTAATAGCATGCTTGTAAC GCAACAAGGTTTGGGATACCTCCAGCCAAACANNNNNNNACCTTCATACGGEST: gi|60338909|gb|DN205882.1|DN205882
genomic: CCGAACAGCATGCCCATGCCCGAGCAACAACCTAATAGCATGCTTGTAACgtgagtaaat ... gacatcgcagGCAACAAGGTTTGGGATACCTCCAGCCAAACACCCCCCCACCTTCATACGG
EST: CCGAACAGCATGCCCATGCCCGAGCAACAACCTAATAGCATGCTTGTAAC GCAACAAGGTTTGGGATACCTCCAGCCAAACACCCC---ACCTTCATACGGEST: gi|78115032|gb|DV533420.1|DV533420
genomic: CCGAACAGCATGCCCATGCCCGAGCAACAACCTAATAGCATGCTTGTAACgtgagtaaat ... gacatcgcagGCAACAAGGTTTGGGATACCTCCAGCCAAACACCCCCCCACCTTCATACGG
EST: CCGAACAGCATGCCCATGCCCGAGCAACAACCTAATAGCATGCTTGTAAC GCAACAAGGTTTGGGATACCTCCAGCCAAACANNNNNNNACCTTCATACGGEST: gi|211019067|gb|FL469808.1|FL469808
genomic: CCGAACAGCATGCCCATGCCCGAGCAACAACCTAATAGCATGCTTGTAACgtgagtaaat ... gacatcgcagGCAACAAGGTTTGGGATACCTCCAGCCAAACACCCCCCCACCTTCATACGG
EST: CCGAACAGCATGCCCATGCCCGAGCAACAACCTAATAGCATGCTTGTAAC GCAACAAGGTTTGGGATACCTCCAGCCAAACACCCC---ACCTTCATACGGEST: gi|31361667|gb|CD446024.1|CD446024
genomic: CCGAACAGCATGCCCATGCCCGAGCAACAACCTAATAGCATGCTTGTAACgtgagtaaat ... gacatcgcagGCAACAAGGTTTGGGATACCTCCAGCCAAACACCCCCCCACCTTCATACGG
EST: CCGAACAGCATGCCCATGCCCGAGCAACAACCTAATAGCATGCTTGTAAC GCAACAAGGTTTGGGATACCTCCAGCCAAACACCCC---ACCTTCATACGG
genomic: CCGAACAGCATGCCCATGCCCGAGCAACAACCTAATAGCATGCTTGTAACgtgagtaaat ... gacatcgcagGCAACAAGGTTTGGGATACCTCCAGCCAAACACCCCCCCACCTTCATACGG
aacggagggagtactatatttcctgcaacactgtgtctgacgtgtgacatcgcagGCAACAAGGTTTGGGATACCTCCAGCCAAACACCCCCCCACCTTCATACGGCTCCGTTGGGGGTAGTAATCCATTCGGGTAAAAGAAGTGTGGGAACACC
gtctgac putative branch site (score: 108)
tactatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcacccgctagttcattgttaactaaacggcgacaaataaaaaagaacggagggagtactatatttcctgcaacactgtgtctgacgtgtgacatcgcagGCAACAAGGTTTGGGATACCTCCAGCCAAACACCCCCCCACCTTCATACGGCTCCGTTGGGGGTAGTAATCCATTCGGGTAAAAGAAGTGTGGGAACACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
-cacccgc
- - - - - - - - - - aactaaa
- - - - - - - - - - - - - - - cgacaaa
- - - - - - - - - - - - - - - - - - -taaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcaacac