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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagttgtcttcccatcagaatgaacaaacaacttctgatggcattttcttacatcttttttcaccacacagCATGGAACAAGTTGTAGCGGCGAGAACAGATTGGAAATTCCTCCCTCGGATGGCAATGGAGTGGTTATGGCACCGCTCGAATCTGGGATCAAGACGTTTT

Basic information

species Zea mays
transcript GRMZM2G038309_T01
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78113294|gb|DV531686.1|DV531686
EST:     GTGATCTTACCCCAAGTGATTCAGACGCGCCTGGAACNNNNNNNGAAGAG                         CATGGAACAAGTTGTAGCGGCGAGAACAGATTGGAAATTCCTCCCTCGGAT
genomic: GTGATCTTACCCCAAGTGATTCAGACGCGCCTGGAACTTTTTCTGAAGAGgttagttgtc ... caccacacagCATGGAACAAGTTGTAGCGGCGAGAACAGATTGGAAATTCCTCCCTCGGAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agaatgaacaaacaacttctgatggcattttcttacatcttttttcaccacacagCATGGAACAAGTTGTAGCGGCGAGAACAGATTGGAAATTCCTCCCTCGGATGGCAATGGAGTGGTTATGGCACCGCTCGAATCTGGGATCAAGACGTTTT
                             ttcttac  putative branch site (score: 2)
                           ttttcttacatctttt  CT-rich tract
                          attttctta  TA-rich tract