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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctaaagcttagctagattatactttttttatttgagtagcatgttcatttgttgatgtcataacatgatttgcttttctactgtattgcgaggacaacagGAAGTTAATGGCAATAGTTCAGACACTGAGCTCTTTGTTGAGGATCACACATTTGAATCAAATGTAGATTTAAATGATGCTCCCCTAAGTCGTTTAACAG

Basic information

species Zea mays
transcript GRMZM2G036872_T01
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19770555|gb|BQ035276.1|BQ035276
EST:     AATTCACTGAAACCAGTGCAAGTGCTTGTGCTGACCTCTATGACCACAAG                         GAAGTTAATGGCAATAGTTCAGACACTGAGCTCTTTGTTGAGGATCACACA
genomic: AATTCACTGAAACCAGTGCAAGTGCTTGTGCTGACCTCTATGACCACAAGgtttgatatt ... aggacaacagGAAGTTAATGGCAATAGTTCAGACACTGAGCTCTTTGTTGAGGATCACACA
EST: gi|211048682|gb|FL410396.1|FL410396
EST:     ATTCACTGAAACCAGTGCAAGTGCTTGTGCTGACCTCTGATGACCACAAG                         GAAGTTAATGGCAATAGTTCAGACACTGAGCTCTTTGTTGAGGATCACACA
genomic: ATTCACTGAAACCAGTGCAAGTGCTTGTGCTGACCTCT-ATGACCACAAGgtttgatatt ... aggacaacagGAAGTTAATGGCAATAGTTCAGACACTGAGCTCTTTGTTGAGGATCACACA
EST: gi|87154043|gb|DY398832.1|DY398832
EST:     AATTCACTGAAACCAGTGCAAGTGCTTGTGCTGACCTCTATGACCACAAG                         GAAGTTAATGGCAATAGTTCAGACACTGAGCTCTTTGTTGAGGATCACACA
genomic: AATTCACTGAAACCAGTGCAAGTGCTTGTGCTGACCTCTATGACCACAAGgtttgatatt ... aggacaacagGAAGTTAATGGCAATAGTTCAGACACTGAGCTCTTTGTTGAGGATCACACA
EST: gi|211424197|gb|FL420637.1|FL420637
EST:     AATTCACTGAAACCAGTGCAAGTGCTTGTGCTGACCTCTATGACCACAAG                         GAAGTTAATGGCAATAGTTCAGACACTGAGCTCTTTGTTGAGGATCACACA
genomic: AATTCACTGAAACCAGTGCAAGTGCTTGTGCTGACCTCTATGACCACAAGgtttgatatt ... aggacaacagGAAGTTAATGGCAATAGTTCAGACACTGAGCTCTTTGTTGAGGATCACACA
EST: gi|20300520|gb|BQ163463.1|BQ163463
EST:     AATTCACTGAAACCAGTGCAAGTGCTTGTGCTGACCTCTATGACCACAAG                         GAAGTTAATGGCAATAGTTCAGACACTGAGCTCTTTGTTGAGGATCACACA
genomic: AATTCACTGAAACCAGTGCAAGTGCTTGTGCTGACCTCTATGACCACAAGgtttgatatt ... aggacaacagGAAGTTAATGGCAATAGTTCAGACACTGAGCTCTTTGTTGAGGATCACACA
EST: gi|211207671|gb|FL419156.1|FL419156
EST:     AATTCACTGAAACCAGTGCAAGTGCTTGTGCTGACCTCTAKGACCACAAG                         GAAGTTAATGGCAATAGTTCAGACACTGAGCTCTTTGTTGAGGATCACACA
genomic: AATTCACTGAAACCAGTGCAAGTGCTTGTGCTGACCTCTATGACCACAAGgtttgatatt ... aggacaacagGAAGTTAATGGCAATAGTTCAGACACTGAGCTCTTTGTTGAGGATCACACA
EST: gi|211214395|gb|FL379565.1|FL379565
EST:     AATTCACTGAAACCAGTGCAAGTGCTTGTGCTGACCTCTATGACCACAAG                         GAAGTTAATGGCAATAGTTCAGACACTGAGCTCTTTGTTGAGGATCACACA
genomic: AATTCACTGAAACCAGTGCAAGTGCTTGTGCTGACCTCTATGACCACAAGgtttgatatt ... aggacaacagGAAGTTAATGGCAATAGTTCAGACACTGAGCTCTTTGTTGAGGATCACACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catttgttgatgtcataacatgatttgcttttctactgtattgcgaggacaacagGAAGTTAATGGCAATAGTTCAGACACTGAGCTCTTTGTTGAGGATCACACATTTGAATCAAATGTAGATTTAAATGATGCTCCCCTAAGTCGTTTAACAG
            tcataac  putative branch site (score: 2)
              ataacat  TA-rich tract