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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctgatttatcaacttttgccatgtgttagggtgagtcaaattactaagatctattttttttttgcagCTCATCTATCAAAATTTACCAAAAGATATTGCAAATAG

Basic information

species Zea mays
transcript GRMZM2G034143_T03
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G034143_T03 (Zea mays), 3'ss of exon 13
lower sequence: LOC_Os02g17320.1 (Oryza sativa), 3'ss of exon 12
gtctgattta-tcaacttttgcca---tgtgttagggtgagtcaaattactaagatctattttttttttgcagCTCATCTATCAAAATTTACCAAAAGATATTGCAAATAG-----------------------------------
|| || |||| || ||||||| ||   | |||| | || ||||||||||||||| |||  |  ||  |||||||| |||||||| |||||||| |||||||||||||| ||                                   
gtttggtttaatctacttttggcattatttgttggagttagtcaaattactaagctct--tgattccttgcagCTAATCTATCACAATTTACCGAAAGATATTGCAAACAGGCATGTGCTGTTGTTGGATCCCATACTGGGAACAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32826280|gb|CD965958.1|CD965958
EST:     TAAAGATTGGGAAGATTCTTATTCATCGGGAAGGAGACAATGGACAACAG                         CTCATCTATCAAAATTTACCAAAAGATATTGCAAATAG
genomic: TAAAGATTGGGAAGATTCTTATTCATCGGGAAGGAGACAATGGACAACAGgtctgattta ... ttttttgcagCTCATCTATCAAAATTTACCAAAAGATATTGCAAATAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttttgccatgtgttagggtgagtcaaattactaagatctattttttttttgcagCTCATCTATCAAAATTTACCAAAAGATATTGCAAATAG
                                     tctattttttttttgc  CT-rich tract
                       tcaaattactaagatc  TA-rich tract