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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctgatttatcaacttttgccatgtgttagggtgagtcaaattactaagatctattttttttttgcagCTCATCTATCAAAATTTACCAAAAGATATTGCAAATAGGCATGTTCTTCTGTTGGACCCCATATTGGGAACAG

Basic information

species Zea mays
transcript GRMZM2G034143_T02
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G034143_T01 (Zea mays), 3'ss of exon 12
lower sequence: LOC_Os11g16370.1 (Oryza sativa), 3'ss of exon 12
gtctgattta-tcaacttttgccatgt--gttagggt-gagtcaaattactaagatctattttttttttgcagCTCATCTATCAAAATTTACCAAAAGATATTGCAAATAGGCATGTTCTTCTGTTGGACCCCATATTGGGAACAG
|| || |||| || |||||||   |||  ||| | ||  ||||| |||||| || |||  |  ||  |||||||| |||||||| ||| ||||||||||||| ||||| |||||||||||  ||||||| |||||| |||||||||
gtttggtttaatctacttttgtattgtttgttggagttaagtcacattactgagctct--tgattccttgcagCTAATCTATCACAATGTACCAAAAGATATAGCAAACAGGCATGTTCTATTGTTGGATCCCATACTGGGAACAG

upper sequence: GRMZM2G034143_T01 (Zea mays), 3'ss of exon 12
lower sequence: LOC_Os02g17320.1 (Oryza sativa), 3'ss of exon 12
gtctgattta-tcaacttttgcca---tgtgttagggtgagtcaaattactaagatctattttttttttgcagCTCATCTATCAAAATTTACCAAAAGATATTGCAAATAGGCATGTTCTTCTGTTGGACCCCATATTGGGAACAG
|| || |||| || ||||||| ||   | |||| | || ||||||||||||||| |||  |  ||  |||||||| |||||||| |||||||| |||||||||||||| |||||||| ||  ||||||| |||||| |||||||||
gtttggtttaatctacttttggcattatttgttggagttagtcaaattactaagctct--tgattccttgcagCTAATCTATCACAATTTACCGAAAGATATTGCAAACAGGCATGTGCTGTTGTTGGATCCCATACTGGGAACAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14311434|gb|BG901189.1|BG901189
EST:     TAAAGATTGGGAAGATTCTTATTCATCGGGAAGGAGACAATGGCCAACAG                         CTCATCTATCAAAATTTACCAAAAGATATTGCAAATAGGCATGTTCTTCTG
genomic: TAAAGATTGGGAAGATTCTTATTCATCGGGAAGGAGACAATGGACAACAGgtctgattta ... ttttttgcagCTCATCTATCAAAATTTACCAAAAGATATTGCAAATAGGCATGTTCTTCTG
EST: gi|148943393|gb|EC888452.2|EC888452
EST:     TAAAGATTGGGAAGATTCTTATTCATCGGGAAGGAGACAATGGACAACAG                         CTCATCTATCAAAATTTACCAAAAGATATTGCAAATAGGCATGTTCTTCTG
genomic: TAAAGATTGGGAAGATTCTTATTCATCGGGAAGGAGACAATGGACAACAGgtctgattta ... ttttttgcagCTCATCTATCAAAATTTACCAAAAGATATTGCAAATAGGCATGTTCTTCTG
EST: gi|32826219|gb|CD965897.1|CD965897
EST:     TAAAGATTGGGAAGATTCTTATTCATCGGGAAGGAGACAATGGACAACAG                         CTCATCTATCAAAATTTACCAAAAGATATTGCAAATAGGCATGTTCTTCTG
genomic: TAAAGATTGGGAAGATTCTTATTCATCGGGAAGGAGACAATGGACAACAGgtctgattta ... ttttttgcagCTCATCTATCAAAATTTACCAAAAGATATTGCAAATAGGCATGTTCTTCTG
EST: gi|211032143|gb|FL160204.1|FL160204
EST:     TAAAGATTGGGAAGATTCTTATTCATCGGGAAGGAGACAATGGACAACAG                         CTCATCTATCAAAATTTACCAAAAGATATTGCAAATAGGCATGTTCTTCTG
genomic: TAAAGATTGGGAAGATTCTTATTCATCGGGAAGGAGACAATGGACAACAGgtctgattta ... ttttttgcagCTCATCTATCAAAATTTACCAAAAGATATTGCAAATAGGCATGTTCTTCTG
EST: gi|37385350|gb|CF629812.1|CF629812
EST:     TAAAGATTGGGAAGATTCTTATTCATCGGGAAGGAGACAATGGACAACAG                         CTCATCTATCAAAATTTACCAAAAGATATTGCAAATAGGCATGTTCTTCTG
genomic: TAAAGATTGGGAAGATTCTTATTCATCGGGAAGGAGACAATGGACAACAGgtctgattta ... ttttttgcagCTCATCTATCAAAATTTACCAAAAGATATTGCAAATAGGCATGTTCTTCTG
EST: gi|60340284|gb|DN207257.1|DN207257
EST:     TAAAGATTGGGAAGATTCTTATTCATCGGGAAGGAGACAATGGACAACAG                         CTCATCTATCAAAATTTACCAAAAGATATTGCAAATAGGCATGTTCTTCTG
genomic: TAAAGATTGGGAAGATTCTTATTCATCGGGAAGGAGACAATGGACAACAGgtctgattta ... ttttttgcagCTCATCTATCAAAATTTACCAAAAGATATTGCAAATAGGCATGTTCTTCTG
EST: gi|110957674|gb|EE177726.1|EE177726
EST:     TAAAGATTGGGAAGATTCTTATTCATCGGGAAGGAGACAATGGACAACAG                         CTCATCTATCAAAATTTACCAAAAGATATTGCAAATAGGCATGTTCTTCTG
genomic: TAAAGATTGGGAAGATTCTTATTCATCGGGAAGGAGACAATGGACAACAGgtctgattta ... ttttttgcagCTCATCTATCAAAATTTACCAAAAGATATTGCAAATAGGCATGTTCTTCTG
EST: gi|24766852|gb|CA401999.1|CA401999
EST:     TAAAGATTGGGAAGATTCTTATTCATCGGGAAGGAGACAATGGACAACAG                         CTCATCTATCAAAATTTACCAAAAGATATTGCAAATAGGCATGTTCTTCTG
genomic: TAAAGATTGGGAAGATTCTTATTCATCGGGAAGGAGACAATGGACAACAGgtctgattta ... ttttttgcagCTCATCTATCAAAATTTACCAAAAGATATTGCAAATAGGCATGTTCTTCTG
EST: gi|67012645|gb|CO441394.1|CO441394
EST:     TAAAGATTGGGAAGATTCTTATTCATCGGGAAGGAGACAATGGACAACAG                         CTCATCTATCAAAATTTACCAAAAGATATTGCAAATAGGCATGTTCTTCTG
genomic: TAAAGATTGGGAAGATTCTTATTCATCGGGAAGGAGACAATGGACAACAGgtctgattta ... ttttttgcagCTCATCTATCAAAATTTACCAAAAGATATTGCAAATAGGCATGTTCTTCTG
EST: gi|78113248|gb|DV531642.1|DV531642
EST:     TAAAGATTGGGAAGATTCTTATTCATCGGGAAGGAGACAATGGACAACAG                         CTCATCTATCAAAATTTACCAAAAGATATTGCAAATAGGCATGTTCTTCTG
genomic: TAAAGATTGGGAAGATTCTTATTCATCGGGAAGGAGACAATGGACAACAGgtctgattta ... ttttttgcagCTCATCTATCAAAATTTACCAAAAGATATTGCAAATAGGCATGTTCTTCTG
EST: gi|211032142|gb|FL160203.1|FL160203
EST:     TAAAGATTGGGAAGATTCTTATTCATCGGGAAGGAGACAATGGACAACAG                         CTCATCTATCAAAATTTACCAAAAGATATTGCAAATAGGCATGTTCTTCTG
genomic: TAAAGATTGGGAAGATTCTTATTCATCGGGAAGGAGACAATGGACAACAGgtctgattta ... ttttttgcagCTCATCTATCAAAATTTACCAAAAGATATTGCAAATAGGCATGTTCTTCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttttgccatgtgttagggtgagtcaaattactaagatctattttttttttgcagCTCATCTATCAAAATTTACCAAAAGATATTGCAAATAGGCATGTTCTTCTGTTGGACCCCATATTGGGAACAG
                                     tctattttttttttgc  CT-rich tract
                       tcaaattactaagatc  TA-rich tract